Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04856 ATGAAAGCAGCACACATTGCTTTGTGCACTTTGCTGGTATTGCTTCTGGCTGAAGTTCAAGTGTCAATGGCAGTAACATGTAGCCCAGTACAGCTCAGCTCATGTGTGAGTGCAATCACCTCTTCAACCCCTCCATCTAACCTATGCTGTTCCAAGATCAAGGAGCAGAAGCCCTGCCTCTGCCAATACCTCAAGAATCCCAATCTCAGGAAGTTTGTTAGCTCTCCCAATGCCAGGAAAGTTGCTAGCACTTGTGGGACTCCCTTCCCAAGGTGCTAA 279 0.4839 MKAAHIALCTLLVLLLAEVQVSMAVTCSPVQLSSCVSAITSSTPPSNLCCSKIKEQKPCLCQYLKNPNLRKFVSSPNARKVASTCGTPFPRC. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04856 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 92 IPR033872 GO:0006869
Seca10g04856 92 CDD nsLTP2 27 92 IPR033872 GO:0006869
Seca10g04856 92 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 92 IPR036312 -
Seca10g04856 92 SMART aai_6 27 92 IPR016140 -
Seca10g04856 92 Gene3D - 25 92 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04856 Seca-Chr10 111934692 111934970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04856 6 92 Acyl Lipid Metabolism Gene Families AT3G18280 60.920 4.91e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04856 - - gmx:100306442 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04856 10 111934692 111934970 Seca10g04856 10 111934692 111934970 ECH