Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04742 ATGGAGTCTCGGAAAGTCGTCGGGTTCGTTGGATTGGATGAATTAGGATTGGAGATGGCGTCATCGCTTGTTCGCCATGGCTACGGTGTCCAAGCTTTCGAGATAAGTGACCCCATCATAAAAGAACTCGTGAAGCTTGGAGGAATTAGATGTTCAAGCCCTTTGGAAGCAGGGAGAGGTGTAGCAGCTTTAGTTGTCCTAATATCTCATGCGGATCAAATTAATGATCTAATTTTTGGGGATGAGGGTGCTTTGAAAGGTCTAAAACCAGATACAGTTCTTATTCTTCGTTCAACCATATTACCATCAGTTCTCCATAAACTGGAGAAAGATCTGGAAGAAATTCACGAGATAGCTTATGTTGTTGATGCATATGTCTCTTATGGGAGGTCTGATGCTTTGAATGGCAAAGTCACTATTGCATCATCTGGAAGATCAGATGCCATTTTAAGAGTACGACCTATTCTTTCAGCAATGTGTGAAAAGCTTTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGTAAGGTTAAAATGGTTGCTGAGATGTTGGAAGGCATTCATTTCATTGCTTCAGTGGAGGCTCTCTCTCTTGGTGTAAAAGCTGGAATTCATCCATGGATAATCTATGATATAATTTCCAATGCTGCTGGAAATTCATGGGTATTCAAGAACAATGTTCCTCTTTTGTTAAAGGGAGTGGTTAAGCATCAAATTCTAAACACTTTTGCTAAGGAGTTGGAAACCATTTTGGATGTGGCCAAGTCACTTACTTTTCCACTTCCACTTTTGGCTGCTACTCATCAACAACTTGTTCACGGTACAAAATTCAGTAAATTATACAGTACTCATTTGCCATCCAGTTTACCAAAAGTTTGGGAAAATGTTTATGGGGTGAAAATTTCAGATACTGCAAATGCTGATGCATATGACCCCGAACATTTGGCATCTGAATGCACTACTGATTCTAAGAGTGGGAGACGGGTTGGTTTTATTGGCCTTGGAGCTATGGGATTTGGCATGGCAACGCATTTGCTGAGTTCGAATTTCTGCGTTGTCGGTTATGATGTGTATGAACCAACTCTAACCCGATTTGCAAATGCTGGTGGCTTGATTGGAAAATCTCCAGCAGAAGTGAGTAAAGATGTTGATGTTCTCATAGTCATGGTTGCAAACGAAGCTCAAGCAGAGAATGCCTTATATGGAGAATATGGTGCAGTTTCAGTTCTTCCTCCGGGAGCATCTATCATTCTTTCTTCTACTGTTTCTCCAGCATATGTGAGTCAGCTAGAGCGCAGATTGCATAATGAAGATAAGAATTTAAAGTTGGTGGATGCCCCTGTTTCTGGTGGTGTTAAGAGGGCATCAATGGGAACACTTACGATAATGGCTTCAGGAACTGATGATGCTCTTAAGAGTTCCGGTTTAGTCTTAGCAGCCTTGAGCGAAAAGCTTTATGTTATCAAAGGTGGTTGTGGTTCTGGAAGCGGTATAAAGATGGTTAATCAATTGCTTGCTGGAGTTCATATTGCATCAGCTGCTGAGGCAATGGCATTTGCAGCACGATTGGGTTTGAATACGAGACTGTTATTTGATTTTATTACAATTAGTGGAGGAACATCCTGGATGTTTGAAAATCGTGTCCCACACATGTTAAACAATGATTACACACCTTATTCAGCACTTGATATCTTTGTGAAGGACCTGGGAATAGTTACTCGTGAATCGTCTTCTTTGAAAGTTCCACTTCATCTATCAACTATTGCTCACCAACTCTATCTTGCAGGCTCTGCTGCGGGTTGGGGACGGAAAGATGATGCTGGTGTGGTCAAGGTTTATGAGACATTAACTGGTGTTAGAGTTGAAGGAAAACTCCAGGCTCTTAGGAAAGACACTGTGTTGCATTCTCTTCCACCTGAATGGCCCCAAGATCATGTTCTTGATATACAAAGACTAAAAGAAAGCAGTTCAAAAATTTTGGTTGTTCTGGATGATGATCCAACAGGAACACAAACTGTTCATGATATTGAGGTATTGACGGAATGGACTATTGATTCATTGATTGGACAGTTTAGAAAAAGTCCAAAATGCTTTTTCATTTTGACAAACTCCAGGTCACTGAGCTCCAAGAAGGCCAGTATATTGATAAAAGAGATTTGCAGAAATCTGGACACTGCAGCAAAATCAGTTGACAACATTGATTATACAGTAGTTTTGAGGGGAGATTCAACTTTGCGTGGTCATTTTCCTGAGGAAGCAGATGCTGTTATTTCAGTATTGGGTGAAATGGATGCATGGATAATTTGTCCCTTTTTCCTTCAAGGAGGCCGTTACACTATTGAAGACATACATTTTGTTGCTGATTCTGATATGCTTGTTCCTGCAGGGGACACAGAGTTTGCCAAAGATGCTGCCTTTGGCTACAAGTCCTCAAACCTGCGTGATTGGGTAGAGGAGAAGACAAATGGTCGAATACTTGCGAGTAGTGTTGTATCTATTTCTATCCACCTTTTGAGGAAAGGGGGGCCAGATGCAGTTTGTCAGCATCTATGCAGTTTGCAGAAGGTATATAAAATTAGAGATATAGTTAATGTTCTTTATGGTTATGTCTATTGTGTTAAGCAGGGGTCAATATGCATAGTTAATGCAGCTAGTGAAAGAGACATGTCTGTATTTGCACTTGGAATGATCAAGGCAGAATTGATGGGAAAACGTTTCTTGTGTCGCACTGCTGCTAGTTTTGTTTCTGCTTGTATAGGAATCATCTCTAAGCCTCCAGTGTTGCCAAAGGATCTAGGAATAGCTAGAGAAAGGAATGGTGGTTTGATAGTTGTGGGATCATATGTTCCCAAAACAACAAAGCAGGTTGAAGAGCTTAAACTACTGTGTGGTCAGTTCTTAAGAAGCATTGAGGTATCTGTTGAAAAACTTGCAATGAAGCCTATCGAGGAGAGGGAGGAGGAAATCAGTAGAACAGCTGAATTAGCAGATGTATATCTTAAAGCTCATAAAGACACTCTTATAATGACCAGCCGAAATCTCATAACTGGAAAAACTGCCTCTGAGAGTTTGGACATTAACTTTAAAGTGAGCTCTGCTTTGGTGGAAATAGTGAAAAGAATAACTACAAAACCTCGCTATATAATTGCAAAGGGTGGTATTACCTCTTCAGACCTTGCTACAAAAGCTCTTGGTGCAAGATGTGCCAAGATTGTTGGACAAGCACTTGCCGGTGTTCCCTTGTGGCAATTAGGCCCTGAAAGTAGACATCCTGGAGTTCCTTACATTGTCTTCCCTGGTAATGTTGGTGACAGCAGAGCACTGGCAGAAGTGGTGAAGTCCTGGTCTCGTCCAATCAGACCTTCATCAACAAAAGAGATTCTTAACAACGCAGAAAAGGGTGGATATGCTGTTGGAGCATTTAACGTCTATAATTTGGAAGGAGTTGAGGCTGTTGTTTCTGCAGCAGAGGAAGAACAAAGTCCTGCTATATTACAGATCCATCCCGGCGCCATGAAGCAAGGAGGAATTCCCTTGGTTGCTTGTTGCATTTCTGCTGCAGAGCAAGCTAGTGTTCCCATTACCGTTCACTTTGATCATGGAACTTCAAAGCAAGATCTTGTGGAAGCTCTTGAGCTGGGATTCAATTCTGTGATGGTGGATGGTTCAAATTTTTCTTTCAATGAAAATGCTGCATACACAAAATTTATATCATCATTGGCTAACTCAAAAGATATGTTGGTTGAAGCTGAGCTTGGAAGATTGTCAGGAACAGAAGATGATTTGACTGTCGAAGAATATGATGCCAGGCTGACAGATGTTAATATGGCACAAAAATTCATCGATGAGACTGGTATAGATGCTTTGGCCGTGTGTATTGGTAATGTGCATGGAAAGTACCCTGCAAGTGGTCCCAATCTCAGACTTGATTTGCTTAAGGAACTGCATGCTTTGAGCCAGAAGAAAGGAGTTTTTCTGGTGCTTCATGGTGCGTCTGGTTTGGGCAAAGAACTTGTTAAGGAATGCATAAATCTTGGTGTTAGAAAGTTCAATGTCAACACCGAAGTAAGGAAGGCATACATGGACTCCCTCATTACTCCCAAGAAAGATCTAGTTCATGTTATGGCTTCTGCAAAGGAAGCCATGAAAGCTGTGGTGGCAGAAAAGATGCATCTCTTTGGTTCAGCAGGAAAGGCATGA 4197 0.4136 MESRKVVGFVGLDELGLEMASSLVRHGYGVQAFEISDPIIKELVKLGGIRCSSPLEAGRGVAALVVLISHADQINDLIFGDEGALKGLKPDTVLILRSTILPSVLHKLEKDLEEIHEIAYVVDAYVSYGRSDALNGKVTIASSGRSDAILRVRPILSAMCEKLFTFEGEIGGGSKVKMVAEMLEGIHFIASVEALSLGVKAGIHPWIIYDIISNAAGNSWVFKNNVPLLLKGVVKHQILNTFAKELETILDVAKSLTFPLPLLAATHQQLVHGTKFSKLYSTHLPSSLPKVWENVYGVKISDTANADAYDPEHLASECTTDSKSGRRVGFIGLGAMGFGMATHLLSSNFCVVGYDVYEPTLTRFANAGGLIGKSPAEVSKDVDVLIVMVANEAQAENALYGEYGAVSVLPPGASIILSSTVSPAYVSQLERRLHNEDKNLKLVDAPVSGGVKRASMGTLTIMASGTDDALKSSGLVLAALSEKLYVIKGGCGSGSGIKMVNQLLAGVHIASAAEAMAFAARLGLNTRLLFDFITISGGTSWMFENRVPHMLNNDYTPYSALDIFVKDLGIVTRESSSLKVPLHLSTIAHQLYLAGSAAGWGRKDDAGVVKVYETLTGVRVEGKLQALRKDTVLHSLPPEWPQDHVLDIQRLKESSSKILVVLDDDPTGTQTVHDIEVLTEWTIDSLIGQFRKSPKCFFILTNSRSLSSKKASILIKEICRNLDTAAKSVDNIDYTVVLRGDSTLRGHFPEEADAVISVLGEMDAWIICPFFLQGGRYTIEDIHFVADSDMLVPAGDTEFAKDAAFGYKSSNLRDWVEEKTNGRILASSVVSISIHLLRKGGPDAVCQHLCSLQKVYKIRDIVNVLYGYVYCVKQGSICIVNAASERDMSVFALGMIKAELMGKRFLCRTAASFVSACIGIISKPPVLPKDLGIARERNGGLIVVGSYVPKTTKQVEELKLLCGQFLRSIEVSVEKLAMKPIEEREEEISRTAELADVYLKAHKDTLIMTSRNLITGKTASESLDINFKVSSALVEIVKRITTKPRYIIAKGGITSSDLATKALGARCAKIVGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDSRALAEVVKSWSRPIRPSSTKEILNNAEKGGYAVGAFNVYNLEGVEAVVSAAEEEQSPAILQIHPGAMKQGGIPLVACCISAAEQASVPITVHFDHGTSKQDLVEALELGFNSVMVDGSNFSFNENAAYTKFISSLANSKDMLVEAELGRLSGTEDDLTVEEYDARLTDVNMAQKFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELHALSQKKGVFLVLHGASGLGKELVKECINLGVRKFNVNTEVRKAYMDSLITPKKDLVHVMASAKEAMKAVVAEKMHLFGSAGKA. 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04742 1398 SUPERFAMILY YgbK-like 659 1111 - -
Seca10g04742 1398 Pfam Nucleotide-binding C-terminal domain 941 1107 IPR031475 -
Seca10g04742 1398 Gene3D - 489 621 IPR013328 GO:0016491
Seca10g04742 1398 Gene3D Aldolase class I 1114 1398 IPR013785 -
Seca10g04742 1398 Gene3D - 932 1113 IPR042213 -
Seca10g04742 1398 Gene3D - 658 917 IPR037051 -
Seca10g04742 1398 Gene3D - 322 488 - -
Seca10g04742 1398 Gene3D - 1 168 - -
Seca10g04742 1398 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 327 485 IPR006115 GO:0050661
Seca10g04742 1398 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 IPR006115 GO:0050661
Seca10g04742 1398 Pfam Sugar-binding N-terminal domain 659 916 IPR010737 -
Seca10g04742 1398 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 270 IPR029154 GO:0051287
Seca10g04742 1398 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 492 612 IPR029154 GO:0051287
Seca10g04742 1398 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 330 343 IPR002204 GO:0016491
Seca10g04742 1398 Pfam Fructose-bisphosphate aldolase class-II 1122 1397 IPR000771 GO:0005975|GO:0008270|GO:0016832
Seca10g04742 1398 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 491 619 IPR008927 -
Seca10g04742 1398 CDD TBP_aldolase_IIB 1123 1396 IPR000771 GO:0005975|GO:0008270|GO:0016832
Seca10g04742 1398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 163 IPR036291 -
Seca10g04742 1398 NCBIfam ketose-bisphosphate aldolase 1122 1398 IPR000771 GO:0005975|GO:0008270|GO:0016832
Seca10g04742 1398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 327 482 IPR036291 -
Seca10g04742 1398 Gene3D - 171 293 IPR013328 GO:0016491
Seca10g04742 1398 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 318 622 - -
Seca10g04742 1398 SUPERFAMILY Aldolase 1118 1398 - -
Seca10g04742 1398 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 170 298 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04742 Seca-Chr10 109013901 109047822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04742 - - gmx:100779987 2300.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04742 10 109013901 109047822 Seca10g04742 10 109013901 109047822 ECH