Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04279 ATGTCTAAACCACAAAATGATCCTGTTCTGCAAGCTGAAACAACATGTGGATCACTTCTTCACGAACTTCAGATAATATGGAATGAAGTTGGGGAGTCTGAGACTGAAAAAGATAGGATGTTGTTTGAGCTCGAACAAGAGTGTCTAGAAGTGTACAGAAGAAAGGTAGATAAAGCTAATCGGTCTAGAGCTCAAATAAGGCAGGAAATCGCTGATTATGAGGCAGAGCTTGCAGCTATCTGTTCAGCAATGGGAGAGCGACCAGTGCATATTAGGCAGTCTGATCAAAAGGCTGAGAGCTTGAAAGAAGAGCTAGCAAGAATTCGCCCAGAGTTGGAGGAAATGAGAAAAAGAAAGTCTGAGCGTAGAAATCAATTTATAGAAGTTCAAGAGCAGATTCAAAGTGTCTCAAATGAGATGTATGGTGCAACAGAATATATACCAGCCATTGTAGATGAAACTGATTTATCATTGAGAAAGCTTGAAGAGTTGCATACACAGCTTCTTGCACTTCAAAAGGAGAAGAGTGATCGCCTCAAGATGGTTCAAGATCACCTCTCCACTTTAAATTCTCTTTGTTCAGTGCTTGGTTTGGACTTTAAGCAGACAGTCAGTGGTGTTCATCCTAGTTTAGGAAATTCAGAAGGATCTATTAGTGTAAATAATGATACCATTAGGCAATTAGCTGTTGCTATACAAGAACTGCGGGAAGTTAAATTACAGAGAATGCAGAAGCTCCAAGATCTAGCAACAACAATGTTGGAGCTCTGGAATTTGATGGATACACCTATCGAAGAGCAACAGATGTTTCAGAATGTTACTTGTAATATAGCTGCTTCAGAACATGAAGTAACTGAACCAAACACCTTGTCTGAGGACTTCATTAATAATGTTAAGGAAGAAGTATCTAGATTAGAAGAGTTAAAATCAAGCAAAATGAAAGAGCTTGTTTTAAAGAAAAGAGCAGAGCTAGAGGAGATCTGTCGAAAGACTCATTTGGTTCCAGAAATTGATAGTGCAGTGGAATATGCTGTTGAAGCTATAGAGTCTGGATCTGTAGACCCTGCTTGTGTGCTTGAACAAATTGAACTTCAGATTGCCCAAGTCAAAGAGGAAGCTTTTAGCCGAAAAGAAATACTTGAAAAGGTTGAGAAATGGTTGTCAGCATGTGATGAAGAGTCTTGGCTTGAGGAGTACAACAGGGATGAAAACCGATACAATGCTGGGAGAGGTACTCATCTTGCTCTCAAGCGAGCTGAGAAAGCCCGTGCCTTGGTTAACAAAATTCCAGCAATAGTAGACAGTTTGACTTCAAAAACTGTAGCATGGGAAAAAGATAATGGCATTGAGTTCATATATGATGGTACCCGTCTGCTCTCTATGCTTGAAGACTACACCTTATTACGACAAGAGAAGGAGCAAGAACGCCGTAGGCAGAGGGACCTGAAAAAACTTCAGGGACAAATGATAGCAGAACAGGAATTACTATATGGGTCAAAACCAAGCCCTTCAAAGCCCCAGAGTGTAAAAAAGGCACCTAAGACACCTAGGACTCCAGGTGGAAGTGCAGCTAGTAGAAGAGTCTCCCTTGGAGGATCAATGCTGCAAACTCCAAAAGCTGATTCGAAAGCCACAAGGAAGACTGACAAAGTGAACCAAATTGAGCAACTAGGTTACCTAGATGATGGTGCTTCATATTTATCATCAGGTAGTTTCCTTTTACTCTACTGTTCTTCCACCTCATATTTTAGTCTCTGGCTTACAGATTTCCAACTTGGTAGGAAGATTCTTCACCGGATTCTCCCACGTACTATTGATGATGGCTTTTTGGTAAGGCTGTATGTGGCACCAAGGAACTACCTAGGCATTTTTTTGTTTGTTGCTGAAGGTGGAGGTCAAAGCCACATCTCAGCTGCTAGAAGAGGACTAGACATTGCTGGTATTCCTATGAGAAAATACTCACTTGGTGCTGGAAATGTTAGGGATATAGAATCTCCTTTGACAAGAAAACCTTTTTCTCCCATCTCTTCAACAGTATCATCAAAAGAGAATGTGGCAAAGGGTGCAGATGAACTGAATATACAGAATGAGAAGTTGCAGAAAACATTAGCAGTTAACAATTTGACATTCATTACTAGTAGTACCTCCTCAAAGACAGCCACTGTGGTAGATGAAGAGAATAGAACTCCAAAGGCAATGCCTATTCCTGTTTCCACCACACCTTTGACAGTGTCAATTCCTATGAATATGAATATGTCCATGACTCCAGCTCCTTCTTCAGTTCCTTTTGGAGGTGACATGGTTAAAGAGATTGAATATTCCTTTGAGGAAAGAAGGCTCGGTTTTTTGTTAGCATGA 2358 0.4063 MSKPQNDPVLQAETTCGSLLHELQIIWNEVGESETEKDRMLFELEQECLEVYRRKVDKANRSRAQIRQEIADYEAELAAICSAMGERPVHIRQSDQKAESLKEELARIRPELEEMRKRKSERRNQFIEVQEQIQSVSNEMYGATEYIPAIVDETDLSLRKLEELHTQLLALQKEKSDRLKMVQDHLSTLNSLCSVLGLDFKQTVSGVHPSLGNSEGSISVNNDTIRQLAVAIQELREVKLQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEHEVTEPNTLSEDFINNVKEEVSRLEELKSSKMKELVLKKRAELEEICRKTHLVPEIDSAVEYAVEAIESGSVDPACVLEQIELQIAQVKEEAFSRKEILEKVEKWLSACDEESWLEEYNRDENRYNAGRGTHLALKRAEKARALVNKIPAIVDSLTSKTVAWEKDNGIEFIYDGTRLLSMLEDYTLLRQEKEQERRRQRDLKKLQGQMIAEQELLYGSKPSPSKPQSVKKAPKTPRTPGGSAASRRVSLGGSMLQTPKADSKATRKTDKVNQIEQLGYLDDGASYLSSGSFLLLYCSSTSYFSLWLTDFQLGRKILHRILPRTIDDGFLVRLYVAPRNYLGIFLFVAEGGGQSHISAARRGLDIAGIPMRKYSLGAGNVRDIESPLTRKPFSPISSTVSSKENVAKGADELNIQNEKLQKTLAVNNLTFITSSTSSKTATVVDEENRTPKAMPIPVSTTPLTVSIPMNMNMSMTPAPSSVPFGGDMVKEIEYSFEERRLGFLLA. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04279 785 Coils Coil 682 702 - -
Seca10g04279 785 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 511 - -
Seca10g04279 785 Coils Coil 98 132 - -
Seca10g04279 785 Gene3D - 365 499 - -
Seca10g04279 785 MobiDBLite consensus disorder prediction 495 529 - -
Seca10g04279 785 FunFam 65-kDa microtubule-associated protein 6 366 499 - -
Seca10g04279 785 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 550 IPR007145 GO:0000226|GO:0008017
Seca10g04279 785 Coils Coil 295 315 - -
Seca10g04279 785 Coils Coil 462 488 - -
Seca10g04279 785 Coils Coil 49 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04279 Seca-Chr10 96831603 96837451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04279 11 524 EF-hand Containing Proteins AT5G62250 57.836 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04279 K16732 - gmx:100777734 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04279 10 96831603 96837451 Seca8g06029 8 153921880 153923883 ECH
Seca10g04279 10 96831603 96837451 Seca10g04279 10 96831603 96837451 ECH
Seca10g04279 10 96831603 96837451 Seca8g06029 8 153921880 153923883 PCT