Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04276 ATGAAAGCTTGTACGCTGCCTATTCATCCACTTCCACCTCACAAAACCTCTCTCCATTTCGCTCCAATGGCTTCTATTCCCACTTTCTCCACCTCCTCTTCTTCTTCTTCTCTACCCACAATCTCTCCCCACGCTTCGTCCCATTCAAACCCCAACCACCAATCTTTAACTTTCCCAGTAACCTCTCTCTTCGGAACCAGAATCAACCTTCAACGCCTAACGTTAACTCGCTCCCCTCCCAACACGAATTGCCGTGCGACCTCAGCAACGGTGTCGTTTAGCCTCCCTACCCCGAAACCCCAACCGGATGCACCAGAGAAAGTCCCAAGGTGGTCGGCGAGGGCTATAAAGTCGTATGCAATGGCAGAATTGGAAGCGAGGAAGCTCAAGTATCCCAACACAGGAACTGAGGCGCTTCTTATGGGGATTTTAGTAGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATAACTCTTTTCAAAGTTCGCGAAGAAACAGTAGATCTACTTGGGAAATCTGACATGTATTTCTTCAGCCCTGAGCATCCTCCTTTGACTGAACCAGCTCAGAAAGCCCTTGATTGGGCAATTAACGAGAAGTTAAAGTCAGGTGAAGAAGGGGAAATAAACGTGACCCATATACTTTTAGGAATTTGGTCACAGGAAGAATCAGCAGGTCAAAAGATCATGGCTTCTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCTAAAATGCAGATTGATGGAGATGTTGATTTGAGTTTCAAGAAGCAAGCTTAA 792 0.4533 MKACTLPIHPLPPHKTSLHFAPMASIPTFSTSSSSSSLPTISPHASSHSNPNHQSLTFPVTSLFGTRINLQRLTLTRSPPNTNCRATSATVSFSLPTPKPQPDAPEKVPRWSARAIKSYAMAELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGITLFKVREETVDLLGKSDMYFFSPEHPPLTEPAQKALDWAINEKLKSGEEGEINVTHILLGIWSQEESAGQKIMASLGFNDEKAKELAKMQIDGDVDLSFKKQA. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04276 263 SUPERFAMILY Double Clp-N motif 110 246 IPR036628 -
Seca10g04276 263 Gene3D - 110 257 IPR036628 -
Seca10g04276 263 MobiDBLite consensus disorder prediction 32 54 - -
Seca10g04276 263 Pfam Clp amino terminal domain, pathogenicity island component 211 245 IPR004176 -
Seca10g04276 263 Pfam Clp amino terminal domain, pathogenicity island component 122 174 IPR004176 -
Seca10g04276 263 ProSiteProfiles Clp repeat (R) domain profile. 105 254 IPR004176 -
Seca10g04276 263 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 30 250 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04276 Seca-Chr10 96756335 96760417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04276 - - gmx:100786582 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04276 10 96756335 96760417 Seca10g04276 10 96756335 96760417 ECH