Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04271 ATGACCCAAACCCGAAAACCCACTAACCCTAAACTCTCTATCCGAGACCCCAAAACCCCTTCTTCTTCTTCCTTCTCAAGAAGCGGCATGAAACTCATCGTGCCCCTTCAGGGCGTGGTTCAAGGTCGTGGAGGCCTTCTTCTTGGTAGCCTCATCCCTTGTGCTCTCTTCTACTTCCTCCAATTATACCTTAAACGACGCCGTTCTGGCTCCAACCCTCATTCTCCCTCTTCCACTTCTTCCCCCACCTTGCCTCGCACTTCTTCCCGCTCCAACTTGTCGACACGTGGATCCATTTCCCGGGTTCGGGTCTCCAAGCTCGCCACCCTCATCTCAAAGCCTGATGAGTCACTCTATTACCTTGGCTTGGAAAGGGTCTCACAAGATCCCTATGATGCCTCCATCAACCCCAATGGAATCATTCAGCTAGGTTTGTCCGATAACAAGTTGTGTTTGGATTTGATTGAGAAATGGGTGTCGCGGAACTTGGAGGGATTGGTTATGGGGAGTGGTGGTGCTGCCAGTTTGAGTATTAATGGGATTGCGCCGTATCAGACGTTTCATGGATTGGACGAATTGAAAATGGCCTTGTCAGATTTTATGCATCAGGTGATGGGAGGATCAGTGAAATTTGACCCATCTAATATGGTACTAACATCTGGAGCAACTCCTGCAATTGAGATACTATCCTTCTGCTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCTTATTATCCAGGATTTGACAGGGACGTGAGATGGCGTCCGGGGGTAGACTTAATACCTGTTCACTGTCGCAGTACTGACAATTTCAATCTAAATATCACTGCTCTTCAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGGATTCTCATCTCCAACCCTTCAAATCCTGTTGGCAATATTCTGACACAAGACATGCTTTATAGTCTTCTAGACTTTGCTGAAGAGAAAAACATTCATATCATTGCTGATGAGGTTTTTGCAGGCTCAACATACGGAAGTGAGACGTTTGTGAGCATTGCTGAAATTCTTGATTCAGAATATATAGACAAGAGCCGGGTTCATATAATATATGGCCTTTCAAAAGACCTCTCCCTTGCTGGCTTTAGAGTTGGGCTTATATATTCATTCAACCAGAGTGTTTTGTCTGCTGCCAAGAAGTTAAGTAGATTTTCATCTATATCTGCTCCGACTCAGAGGTTAGTTACCGCAATGCTTTCAGATAAAAGATTTATCCAGGAGTACATTGTAACCAACCAGAAAAGAATAAGACAGGTGCATGATGAATTTGTGGATTGTTTAAGTAAACTAGGAATCAAGTGTTCCAAGAGCAGTGCTGGCATGTTCTGCTGGGCTGATATGAGTGGATTAATCCGACCTTATAGTGAGAAAGGAGAACTTGATTTGTGGGAGAGGTTTATGAGTGTTGCAAAGATCAATATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACCACTATAACTTTTGAGGATATCCCTCTAGTGATTGAAAGGATTAGGAAAGTTGTTGAAAGTTGTAAATCACCAAGATGA 1602 0.4395 MTQTRKPTNPKLSIRDPKTPSSSSFSRSGMKLIVPLQGVVQGRGGLLLGSLIPCALFYFLQLYLKRRRSGSNPHSPSSTSSPTLPRTSSRSNLSTRGSISRVRVSKLATLISKPDESLYYLGLERVSQDPYDASINPNGIIQLGLSDNKLCLDLIEKWVSRNLEGLVMGSGGAASLSINGIAPYQTFHGLDELKMALSDFMHQVMGGSVKFDPSNMVLTSGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFNLNITALQQAFSQARKRGVKVRGILISNPSNPVGNILTQDMLYSLLDFAEEKNIHIIADEVFAGSTYGSETFVSIAEILDSEYIDKSRVHIIYGLSKDLSLAGFRVGLIYSFNQSVLSAAKKLSRFSSISAPTQRLVTAMLSDKRFIQEYIVTNQKRIRQVHDEFVDCLSKLGIKCSKSSAGMFCWADMSGLIRPYSEKGELDLWERFMSVAKINITPGSACHCIEPGWFRICFTTITFEDIPLVIERIRKVVESCKSPR. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04271 533 Gene3D - 163 416 IPR015421 GO:0003824
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 169 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 237 258 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 327 350 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 215 235 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 361 385 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 291 315 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 178 194 - -
Seca10g04271 533 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 393 416 - -
Seca10g04271 533 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 367 380 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca10g04271 533 Pfam Aminotransferase class I and II 141 522 IPR004839 GO:0009058|GO:0030170
Seca10g04271 533 CDD AAT_like 184 524 - -
Seca10g04271 533 MobiDBLite consensus disorder prediction 70 97 - -
Seca10g04271 533 MobiDBLite consensus disorder prediction 1 27 - -
Seca10g04271 533 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 100 527 - -
Seca10g04271 533 Gene3D Aspartate Aminotransferase, domain 1 129 520 IPR015422 GO:0003824
Seca10g04271 533 SUPERFAMILY PLP-dependent transferases 109 527 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04271 Seca-Chr10 96488632 96492566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04271 K14270 - gmx:100800539 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04271 10 96488632 96492566 Seca10g04271 10 96488632 96492566 ECH