Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04104 ATGGGGAATTCATTTGGGTGCTCGGCTTCCGGCGAGAGGTTAGTGTCGGCGGCGAGGGACGGTGATTTGGTTGAGGCGAAGATGCTTTTGGAATTCAACCCTTGTCTTGCTAAGTACTCTACCTTCGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCGTTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGGAATTATTGCGGGCAGACGGCTTTGATGCAAGCATGTAGATATGGTCATTGGGAAGTTGTCCAGACCCTTCTGCTCTTCAGATGCAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTCAATGGGCATGTAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTCCAAGTGCTCCTTATGAAGCTTTACATGCTCGCACGGATGCTGACACGAGTGAAGGATCAAATGTGAAAAGCAAACATGAGCAAAGTGCACTGTCGAAGTTTGTAAACAAGACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGATATTTTGATTGTGTACAACTGCTACTTGATCTTCATGCAAATGTGTCTGCTGCAACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCACTATGCTGCATGTGGGGGCAATTTAAAATGCTGTCAGGCAAGAATTATTCTCATTGCAAGAGGTGCCAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCTCTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCATTGCTTTCACCCAGTTCTGATGCCATAATATCGTCATTCCCTTCTTCAAAATATTTGTCTTTACCTCTCATGAGTGTGCTCAACATAGCCAGAGAGTGTGGATTGCAATCATCTATGACCTCCTCTAATGAGATTGACTTTTGTGCTGTCTGCCTGGAGAGGCCATGTTCAGTAGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTCAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAGATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAATTACACATGTCTCTCAGCCTGTGTACACCATGCATGCAACACCCACGTGATCTAGATCAACGATCTCTTTCTCATGCACCAGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCTTCAGAGATGCTTTGCCCTGTCACTTGTACACCATTTCCATCTGTAGCAATTCCTCTATGTACCTGCAATGATGGTCCTTGTCCATCATTTGAACCACGGGAAGGAGAAACACAAGACGAATCGCCTCGCCACTCACAAGCTTCAACAACAGATCAGGATAAAACAGAAGGGCCAAGACTGGAGAAAACAACATGTTCAAGCATGTTTTGGAGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCATGA 1548 0.4528 MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPYEALHARTDADTSEGSNVKSKHEQSALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLHANVSAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQARIILIARGASRMALNCNGWLPLDVARMWGRHWLEPLLSPSSDAIISSFPSSKYLSLPLMSVLNIARECGLQSSMTSSNEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHMSLSLCTPCMQHPRDLDQRSLSHAPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREGETQDESPRHSQASTTDQDKTEGPRLEKTTCSSMFWSRRSCSREHQCNSEINA. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04104 515 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Seca10g04104 515 Gene3D - 8 139 IPR036770 -
Seca10g04104 515 ProSiteProfiles Ankyrin repeat region circular profile. 220 249 - -
Seca10g04104 515 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Seca10g04104 515 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Seca10g04104 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 391 IPR013083 -
Seca10g04104 515 ProSiteProfiles Ankyrin repeat profile. 220 255 IPR002110 GO:0005515
Seca10g04104 515 SUPERFAMILY RING/U-box 321 378 - -
Seca10g04104 515 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Seca10g04104 515 Pfam Ankyrin repeats (many copies) 158 198 IPR002110 GO:0005515
Seca10g04104 515 ProSitePatterns Zinc finger RING-type signature. 337 346 IPR017907 -
Seca10g04104 515 MobiDBLite consensus disorder prediction 459 492 - -
Seca10g04104 515 MobiDBLite consensus disorder prediction 461 488 - -
Seca10g04104 515 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Seca10g04104 515 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Seca10g04104 515 Gene3D - 141 273 IPR036770 -
Seca10g04104 515 ProSiteProfiles Zinc finger RING-type profile. 322 372 IPR001841 -
Seca10g04104 515 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 111 310 - -
Seca10g04104 515 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Seca10g04104 515 Pfam Ankyrin repeat 221 254 IPR002110 GO:0005515
Seca10g04104 515 SMART ANK_2a 177 206 IPR002110 GO:0005515
Seca10g04104 515 SMART ANK_2a 44 73 IPR002110 GO:0005515
Seca10g04104 515 SMART ANK_2a 77 106 IPR002110 GO:0005515
Seca10g04104 515 SMART ANK_2a 111 141 IPR002110 GO:0005515
Seca10g04104 515 SMART ANK_2a 220 250 IPR002110 GO:0005515
Seca10g04104 515 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Seca10g04104 515 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Seca10g04104 515 SUPERFAMILY Ankyrin repeat 14 276 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04104 Seca-Chr10 91005943 91012589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04104 14 282 Miscellaneous Gene Families AT2G31820 29.044 4.18e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04104 K19044 - gmx:100812809 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04104 10 91005943 91012589 Seca10g04104 10 91005943 91012589 ECH