Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04085 ATGGCCGACGACGACTACAATGACTATGACATGGGGTATGAAGATGAGCCAGCAGAGCCTGAGATTGAGGAAGGTGCAGAGGAGGATGTGGATAACAACAATAACAACAACAACAATGATGATGTCACTGGAGAGCCTCTTGAAACTGAGGAAAAGGAAGAACAAGAACCAACAGCACGGCCTAGAAAAACATCCAAATATATGACCAAGTATGAGCGTGCCAGGATTTTGGGTACTCGGGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTAGAGTTGGAAGGGGAGACTGACCCACTTGAGATTGCCATGAAGGAGCTTCGAGAGCGGAAGATACCCTTTACCATCCGTCGTTACTTGCCTGATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTAACTGA 444 0.4707 MADDDYNDYDMGYEDEPAEPEIEEGAEEDVDNNNNNNNNDDVTGEPLETEEKEEQEPTARPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGN. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04085 147 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 137 - -
Seca10g04085 147 MobiDBLite consensus disorder prediction 53 67 - -
Seca10g04085 147 Pfam RNA polymerase Rpb6 64 115 IPR006110 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 SMART RNA_pol_Rpb6_2 62 115 IPR006110 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 SUPERFAMILY RPB6/omega subunit-like 1 137 IPR036161 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 138 - -
Seca10g04085 147 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 66 121 IPR006111 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 PIRSF RpoK/RPB6 1 138 IPR006111 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 PIRSF RPB6 1 138 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Seca10g04085 147 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 69 83 IPR020708 GO:0003677|GO:0003899|GO:0006351
Seca10g04085 147 MobiDBLite consensus disorder prediction 1 30 - -
Seca10g04085 147 MobiDBLite consensus disorder prediction 1 67 - -
Seca10g04085 147 Gene3D - 3 138 IPR036161 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04085 Seca-Chr10 90102340 90105359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04085 K03014 - cave:132161775 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04085 10 90102340 90105359 Seca10g04085 10 90102340 90105359 ECH