Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04020 ATGGACTCTAGAGCAATGCAAAGTCATGCACACAATTACGATGAACATCATCATCATGATCCCCATAATGTTGCTTCACAACAAGTGGGACATGGACATGGTGTTGAAGAGCACCACGATGACCATGAGAAGAAGTCGGTTCTGAAGAAAGTCAAAGCAAAGGCTAAGAAAATTAAGGACACAATCACGAAGCATGGTCATCATGACCATGAACATGGTCATGAGTATCATTATGAAGATCAACATATCCCTGATGATCATGACATGGATGAGGAAGATGATGAGGAAGAAGAAATGGTTCAAGATCCTGAAGTTCATGGAGCACCAATTTATGATAGTGCTGCTGTTAGAAATGCTACACCAGGGCAAGTCCAAACTACAGGGAGGCCTAAAGTTAATTATGGGGGAACAACTCTTTTGGGTGAAGAACCTCATCATGAGCCAAGAGTTGTAGTTGTTTCTCCAGTTACTGAAATTAATCAAAGTAGATCCACTGACCCAACCAGAACATTTGTTGGGGGAGAGAAAACAGTGCAATCTAAGGTCAATTTGGAGAGACCAATGGGCTTGGAGGAAGACCCTCATGCACCAGGAAGTAGACCTCAAGCACATGCTCCAGCCAACTATCAAACCAAAGTCACAGATCCAACTGGGACAGGTGGGTCAGAAATTGACATTACCCCAGTTCAGAACTCTCTTGCCAGGATGAATGTCCACAATGAGCCAAAACCTAGTCCAGCACCAAAAGACCTTCCAACTATTACTGAAACTCAGTACCCTTCTGTTGGAAGCCATCACCAATGTGTGCCAGAGCTGTCTACTGCAACCAAAACTCACTACCCATCTACTCAAAGCCATGACCAAAACTTACCACAATTATCTAGTGAAATTAAAACTCAATATCCTAAAAGCCATGATCAGTCTACGCCATTACCAAGTTTTTCTACTTCAACCAAAACTCAGTACCCTTACCCTTCTGCTACAAGCCATGACCAAAACTTGTCACAACTGCCTAGTGCAACAAAACCTCATTACCCTTCTGCTGGAAGCCATGATCACTCTATGCCATTGCCTACTTCAATCAAAACTCAGTACCCTTACCCTTCTGCTACAAGCCATGACCACAACTTGTCAGGACTTCCTACTGCAACACAAACTCAATACCCTTCTGCCACAAGCCATGACCAAAACTTGTCAGGACTTCCTAGTGCAACACAAACTCAATACCCTTCTGCTGGAAGCCATGACCAGTTTACACCAGAGTTTTCTACTCGATCAACAACAACCGGACAAAGAAACAACAATAACATCACAGTTGAAGAGCAACCTCAAACTCAAACATACCAAGAATCCATGGAGAAACCATCAAACCAAACCAGTTACACAGAGAAAATCTCCTCCGCTACCTCTGCAATCGCCGACAAAGCCATCACCGCTAAAAACACCGTAGCTTCAAAGCTTGGATACGGCGAAAAAGGTGATGTCAAAGAGGAGAACCAAACAAGTTCTGAAAAACCAACAAACCAGAGCAGTTACACAGAGAAAATCTCATCTGCTACTTCTGCAATTGCTGATAAAGCTGCTTCTGCTAAAAACACTGTAGCATCTAAGCTTGGCTTCGGTGAGAAAGGTGATGAGGACGAAAAGGTGACACCCCACGAAGAGAATAAGAGCGAGAACACTTCTGCTACATCAGGATCACCTACAGGATATGGAAAGAAAGTTGCTGTGTCTTTGACAGAGAAACTGGCTCCAGTTTATGAGAAGGTTTCTGGGGTAGGAAGTGCAGTGAAATCAAAAGTTCCTGGAACTGGAAGTGGGGTTGTGGAACAAGATAAAGGGGTTTCTATGAAGGACTATTTTGCTGAGAAGCTGAGGCCTGGTGATGAAGACAGGGCTCTTTCTGAGGTGATATCAGAGACACTGTATAAGAAAGGAGAAGAGCCAATGGAGGAGGAAGTGGATAGGGATGTGAAGAAGGTGGTTACTGATGCTGTACACAAGCGAGGAGAGGAAGTTGATAAGAGACGATCACAACATCGACCCTTGGGGAGGGTGACTGAGTCAGAGGAAGTGAAGAGGAGGTTGGGAACAGGGGATGAGGAAACAGAGAAAAGGTATGAAGAGAGCTATGTGAATAGCCCTGGAAAAGGTGTGGTTGATAAGCTTAAGGATGTGGTTGGATCATGGTTTGGTACCTCACAAGAAGGTGAAGATATGTCTAGGAATACTACTGGCACTGGGGTGGAAGTGGAACAGGTTAATCAAGCTACAGGGGAAAGAAGACTACAGGAGTCAGCTAATTGA 2307 0.4417 MDSRAMQSHAHNYDEHHHHDPHNVASQQVGHGHGVEEHHDDHEKKSVLKKVKAKAKKIKDTITKHGHHDHEHGHEYHYEDQHIPDDHDMDEEDDEEEEMVQDPEVHGAPIYDSAAVRNATPGQVQTTGRPKVNYGGTTLLGEEPHHEPRVVVVSPVTEINQSRSTDPTRTFVGGEKTVQSKVNLERPMGLEEDPHAPGSRPQAHAPANYQTKVTDPTGTGGSEIDITPVQNSLARMNVHNEPKPSPAPKDLPTITETQYPSVGSHHQCVPELSTATKTHYPSTQSHDQNLPQLSSEIKTQYPKSHDQSTPLPSFSTSTKTQYPYPSATSHDQNLSQLPSATKPHYPSAGSHDHSMPLPTSIKTQYPYPSATSHDHNLSGLPTATQTQYPSATSHDQNLSGLPSATQTQYPSAGSHDQFTPEFSTRSTTTGQRNNNNITVEEQPQTQTYQESMEKPSNQTSYTEKISSATSAIADKAITAKNTVASKLGYGEKGDVKEENQTSSEKPTNQSSYTEKISSATSAIADKAASAKNTVASKLGFGEKGDEDEKVTPHEENKSENTSATSGSPTGYGKKVAVSLTEKLAPVYEKVSGVGSAVKSKVPGTGSGVVEQDKGVSMKDYFAEKLRPGDEDRALSEVISETLYKKGEEPMEEEVDRDVKKVVTDAVHKRGEEVDKRRSQHRPLGRVTESEEVKRRLGTGDEETEKRYEESYVNSPGKGVVDKLKDVVGSWFGTSQEGEDMSRNTTGTGVEVEQVNQATGERRLQESAN. 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04020 768 MobiDBLite consensus disorder prediction 668 711 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 538 573 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 1 47 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 299 463 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 251 268 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 62 84 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 540 556 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 734 768 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 32 47 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 237 268 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 161 177 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 1 24 - -
Seca10g04020 768 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 497 768 IPR037491 GO:0009737
Seca10g04020 768 MobiDBLite consensus disorder prediction 502 516 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 353 463 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 204 225 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 732 768 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 668 719 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 61 95 - -
Seca10g04020 768 Pfam CAP160 repeat 465 490 IPR012418 -
Seca10g04020 768 Pfam CAP160 repeat 516 541 IPR012418 -
Seca10g04020 768 MobiDBLite consensus disorder prediction 557 571 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 491 516 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 299 343 - -
Seca10g04020 768 MobiDBLite consensus disorder prediction 161 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04020 Seca-Chr10 86575833 86578924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04020 - - ahf:112802849 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04020 10 86575833 86578924 Seca10g04020 10 86575833 86578924 ECH