Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04019 ATGAACTCAATAACCCTCTTAGGTCATAGGATGGTTCAGAAAATTTCACATTGTTTATACGTTTCTCGGAAATTATGCTACCAACCGTTTCACGTTGATGACGAGGCTGTTAGAAGCGGGTTTGAATTGGTTGAGGAGCCTTTGAAAAATTTGTTTGCAGCTTCATGCGAAAGTGTAGATTCGAACATGGATTCGAACCACGAACACAATAGCTTTGGCTACAATCGAAGGCGATTTTTTGTGAGAGATGGTTTTATTGAAAATGTGAGGATGGATGTAGAGAAGGTTCTTGAGGTTCTCTGGCGAGACAACCTCGATTTTGATTTTAGGGCTTCGTTAGATGAGTTGCGTATAAGGCCATCGCAGCTTCTTGTGAAAGAGGTCCTGAACAGGGTGTTGAGAGAGGTGAACTGTGAAAACAAAACCAGGTTTGCGAAATTGGCGTATAAATTTTTCGTGTGGTGTGGCCAGCAGGAAGGTTATTGGCACACTGCTAATTCTTATCACTTGATTATGCAGATATTTGCAGAGTGTGAGGAGTTTCAGGCAATGTGGAGGCTTGTTGATGAGATGATTGAGAAAGGTTTTCCAGCCACCGCTCGCACTTTCAACATTTTGTTATGTGCTTGCCGTGAGGCCGGTTTTGCTAGGAATCTGGTGATAAAGTTCATAAAGTCGAAATCGTTTAACTACCGGCCTTTTAAGCACTCCTATAATGCAATTCTTCATTGCCTTCTTGGTTTAAACCAGTACAGGTTGATTGAGTGGGTTCATAGGCAGATGTTGCTGGACGGTCTTTCCTCAGATGTTTTTACTTATAATATTGTCATGCTTGCCAAGTACAGACTTGGGAAGTTGTACCAGTTCCACAGGCTGCTTGGTGAGATGGGGAGAAATGGCCTGTCTCCAGATTTTCATACTTATAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAGACCACTTGCTGCTCTTAATCTTTTAAATCAAATGAGAGAAACAGGTATTGATCCAACTGTTCTTCATTTCACCACGCTGATAGATGGACTGAGCAAAGCAGGAAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAAAATGGCTGTGTGCCAGATGTGGTGGCATACACTGTAATGATCACGGGATATGTGGTGGATGGTCAGCTTGAGAAAGCTCAGGAAATGTTTGATGAGATGATTTCTAGAGGACAAGTCCCAAATGTATTTACATACAATTCCATGATTCGTGGATTGTGTATGGCAGGGAAGTTTGATGAAGCATGCTCAATGCTCAAGGAAATGGAGACAAAAGGTTGTAGTCCAAATTTTGTAGTCTATAGTACGTTAGTGAGTAATCTGCGGAATGCTGGAAAGCTTTCTAAAGCTCGTAAAGTGATAAGACAGATGATGCAGAAAGGGAAGTATGTCCACCTTGTTTCAAGGATCAAAGGGCAAAGATATAAGAGATAG 1476 0.4112 MNSITLLGHRMVQKISHCLYVSRKLCYQPFHVDDEAVRSGFELVEEPLKNLFAASCESVDSNMDSNHEHNSFGYNRRRFFVRDGFIENVRMDVEKVLEVLWRDNLDFDFRASLDELRIRPSQLLVKEVLNRVLREVNCENKTRFAKLAYKFFVWCGQQEGYWHTANSYHLIMQIFAECEEFQAMWRLVDEMIEKGFPATARTFNILLCACREAGFARNLVIKFIKSKSFNYRPFKHSYNAILHCLLGLNQYRLIEWVHRQMLLDGLSSDVFTYNIVMLAKYRLGKLYQFHRLLGEMGRNGLSPDFHTYNILLHVLGKGDRPLAALNLLNQMRETGIDPTVLHFTTLIDGLSKAGNLDACKYFFDEMIKNGCVPDVVAYTVMITGYVVDGQLEKAQEMFDEMISRGQVPNVFTYNSMIRGLCMAGKFDEACSMLKEMETKGCSPNFVVYSTLVSNLRNAGKLSKARKVIRQMMQKGKYVHLVSRIKGQRYKR. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Seca10g04019 491 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 303 477 - -
Seca10g04019 491 Gene3D Tetratricopeptide repeat domain 109 220 IPR011990 GO:0005515
Seca10g04019 491 Gene3D Tetratricopeptide repeat domain 221 359 IPR011990 GO:0005515
Seca10g04019 491 Gene3D Tetratricopeptide repeat domain 360 488 IPR011990 GO:0005515
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Seca10g04019 491 NCBIfam pentatricopeptide repeat 411 444 IPR002885 -
Seca10g04019 491 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Seca10g04019 491 NCBIfam pentatricopeptide repeat 343 375 IPR002885 -
Seca10g04019 491 NCBIfam pentatricopeptide repeat 376 410 IPR002885 -
Seca10g04019 491 NCBIfam pentatricopeptide repeat 446 475 IPR002885 -
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Seca10g04019 491 Pfam PPR repeat 439 471 IPR002885 -
Seca10g04019 491 Pfam PPR repeat 335 366 IPR002885 -
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Seca10g04019 491 Pfam PPR repeat family 373 421 IPR002885 -
Seca10g04019 491 Pfam PPR repeat family 269 315 IPR002885 -
Seca10g04019 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04019 Seca-Chr10 86562087 86563562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04019 237 475 Glycosyltransferase AT1G05670 32.636 2.00e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04019 - - mtr:25496345 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04019 10 86562087 86563562 Seca10g04019 10 86562087 86563562 ECH