Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03959 ATGGGAACATCAGTGCAGGTAACGCCTCTGTGTGGAGTGTACAATGAGAACCCTCTCTCCTACTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGATTGTGGCTGGAACGACCACTTCGACCCCTCCCTCCTTCATCCCCTCTCCAGGGTGGCATCAACTATAGATGCTGTCTTGCTTTCACATCCTGATACACTTCACCTTGGTGCCCTCCCATATGCTATGAAGCAGCTTGGACTCAATGCTCCAGTTTTTTCTACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTACGACCAGTTCCTCTCAAGAAAGCAAGTATCCGAGTTTGATCTGTTCACACTAGACGATATTGATTCTGCTTTTCAAAGTGTAACAAGGCTAACATACTCTCAGAATCATCATCTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCATGTTGCTGGGCATCTTTTGGGAGGTACTGTATGGAAAATTACAAAGGATGGTGAAGATGTCATATATGCTGTTGATTTTAATCATCGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGGCCAGCTGTTCTAATAACTGATGCTTATAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGACAAAGAATTTGGAGATATATTAAAGAAGACTCTAAGGGCAGGTGGCAATGTTTTACTACCTGTTGACACTGCTGGAAGAGTGTTGGAACTTATTCTGATGTTGGAATCGTACTGGACTGATGAAAACTTGAACTACCCTATATACTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAACAAACTCGTGAAAATATATTTCTCTTGAAGTATGTCACACTTCTTGTTAACAAGACTGACCTTGACAATGCTCCAGATGGACCAAAGGTTGTTCTAGCATCCATGGCAAGTTTGGAAGCGGGTTTTTCTCATGATATATTTGTTGAGTGGGGAAACGATGTAAAAAATCTTGTGCTATTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAGGCTGATCCACCTCCAAAAGCTGTCAAGGTCACTGTGTCCAAGCGGGTTCCTTTGGTTGGGGAAGAGCTAATTGCCTATGAGGAAGAGCAAAATCGAATAAAGAAAGAAGAAGCTTTAAAAGCCAGTCTTTTGAAAGAGGAAGAATTGAAAGCATCTCATGGAGCTGATAATAATACTAGTGATCCAATGGTTGTTGATTCTGGCAATAATCATCCACCACCAGAAGGGGCTGGTCCACGAGGTGGAGGCTACCGTGACATATTTATTGATGGATTTGTTCCCCCTTCGACAAGTGTTGCCCCAATGTTTCCCTATTATGAGAATACATCAGAGTGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGGACCAGACAGCGATGCATGTAGGAGGTGATATAAATGGAAAACTAGATGAAAATGCTGCTAGTTTAATACTTGATACAAAGCCATCGAAAGTCATATCTGATGAAAGAACTGTACAAGTCAGATGTTCATTGGTTTACATGGACTTTGAAGGCCGTTCAGATGGAAGATCCATTAAAAATATTCTCTCCCATGTGGCTCCCCTAAAGCTGGTTTTGGTGCATGGGTCAGCTGAAGCTACAGAACATCTGAAGCAACACTGCCTGAAGAATGTCTGTCCTCACGTTTATGCTCCCCAAATTGAAGAGACAATTGATGTTACCTCTGATTTATGTGCTTATAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGCTGGGAGATTATGAAATAGCTTGGGCTGATGCTGAAGTAGGGAAGACAGAAAATGACATGCTTTCACTGCTCCCTGTTTCTGGAACATCTCCCCCACACAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATTTCAAGCAGTTCCTCGCCAGCAAGGGTGTTCAGACATGA 2052 0.4211 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLHPLSRVASTIDAVLLSHPDTLHLGALPYAMKQLGLNAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFLLKYVTLLVNKTDLDNAPDGPKVVLASMASLEAGFSHDIFVEWGNDVKNLVLFTERGQFATLARMLQADPPPKAVKVTVSKRVPLVGEELIAYEEEQNRIKKEEALKASLLKEEELKASHGADNNTSDPMVVDSGNNHPPPEGAGPRGGGYRDIFIDGFVPPSTSVAPMFPYYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHVGGDINGKLDENAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWADAEVGKTENDMLSLLPVSGTSPPHKSVLVGDLKLADFKQFLASKGVQT. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03959 683 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Seca10g03959 683 MobiDBLite consensus disorder prediction 417 449 - -
Seca10g03959 683 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 586 IPR011108 -
Seca10g03959 683 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Seca10g03959 683 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 682 IPR027075 GO:0005847|GO:0006378|GO:0006379
Seca10g03959 683 Gene3D - 7 260 IPR036866 -
Seca10g03959 683 Pfam Beta-Casp domain 242 365 IPR022712 -
Seca10g03959 683 SMART Lactamase_B_5a 17 230 IPR001279 -
Seca10g03959 683 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Seca10g03959 683 SMART Beta_Casp_2 242 365 IPR022712 -
Seca10g03959 683 Coils Coil 392 412 - -
Seca10g03959 683 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03959 Seca-Chr10 84425044 84438633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03959 K14402 - gmx:100777002 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03959 10 84425044 84438633 Seca10g03959 10 84425044 84438633 ECH