Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03936 ATGTCTTCTTCTGGTTTTTCATCTTCTTCCACTGCAGAGGAGGTTACTCAAGGGATCGATGGGAGTGGTCTCACTGCGATTGTAACAGGAACAACCAATGGTATTGGCACTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGGGTGAGAAATGTGACTGCTGGAGAAAATGTCAAAGAAGCAATACTTAAGGAGATTCCCACAGCTAAAGTTGAAGCTAAGGAGTTAGATCTCAGTTCAATGGCATCAGTCCGAAAATTTGTATCAGAGTTTAATTCTTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTTGTGCAGCCCCTTTCACGCTGTCCAAAGACAACATTGAACTACAATTTGCCACAAATCACTTAGGTCATTTTCTCTTAACAAATCTTTTGTTGGATACTATGAAGAAAACAGCACATGAAAGCAAGAAAGAAGGAAGAATTATTATTGTCTCCTCTGATGGTCACAGATATACATATCCTGCAGGAATCTCTTTTGATAAAATTAATGATGAATCAAGTTACCAGAAATGGCAGGCATATGGTCAATCAAAGCTTGCTAACATATTACATGCCAATGAACTTGCAAGATATCTTAAGGAAGAAGGGGTAGATATTACTGCAAATTCTCTTCATCCAGGAGCTATTGTCACCAATATTGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGCAAGTATTTTTCAGACAGTAATCTGGCTGAACCAAACCCACAGGGAACAGACGCTGATTTGGCAAAGAAACTCTGGGATTTCAGCATGAAATTAATTGAATAG 852 0.3967 MSSSGFSSSSTAEEVTQGIDGSGLTAIVTGTTNGIGTETARVLALRGVHVIMGVRNVTAGENVKEAILKEIPTAKVEAKELDLSSMASVRKFVSEFNSSGLPLNILINNAGICAAPFTLSKDNIELQFATNHLGHFLLTNLLLDTMKKTAHESKKEGRIIIVSSDGHRYTYPAGISFDKINDESSYQKWQAYGQSKLANILHANELARYLKEEGVDITANSLHPGAIVTNIGAATTCYVALHPQVKGISGKYFSDSNLAEPNPQGTDADLAKKLWDFSMKLIE. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03936 283 Pfam short chain dehydrogenase 25 173 IPR002347 -
Seca10g03936 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 258 IPR036291 -
Seca10g03936 283 PANTHER RETINOL DEHYDROGENASE 4 282 - -
Seca10g03936 283 Gene3D - 16 283 - -
Seca10g03936 283 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Seca10g03936 283 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Seca10g03936 283 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Seca10g03936 283 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Seca10g03936 283 CDD retinol-DH_like_SDR_c_like 23 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03936 Seca-Chr10 83664646 83670987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03936 25 177 Acyl Lipid Metabolism Gene Families AT3G55290 32.075 1.40e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03936 - - mtr:25496527 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03936 10 83664646 83670987 Seca10g03936 10 83664646 83670987 ECH
Seca10g03936 10 83664646 83670987 Seca10g03936 10 83664646 83670987 PCT