Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03888 ATGGCGTCTCTCAGGCTATCCTCTTTCTCTCACCTCTTCTCCTCACCCTCTACCGCCACCATTTCTCGCCGTTCCCCCGCGATTCTACGACGGCGCCGCCACAGTCGCCAACCACGGCTACCACCACTCGCCGCCAGCTTCTCCGCCCAAAGCGTGCCGGCGGAGACCCAGGACCGAGTCGATAACTCGAAGAACCGAGCCCCCGACCGAGTCATCACTCCGAGGTCACAGGACTTCAATGCTTGGTACCTGGACGTCATAGCCAACGCCGAACTAGCTGATTACGGTCCGGTTCGCGGTACAATGGTCATTCGTCCCTACGGTTACGCCATTTGGGAATCCATTCAGGAGTATTTGAATGTGAAGTTCAAGGAGACTGGGCATAGTAACATGTATTTTCCACAGTTTATCCCATACTCATTTATAGAGAAAGAAGCAAGTCATGTTGAGGGTTTCAGTCCTGAGTTGGCACTAGTGACAATTGGGGGTGGAAAGGAACTTGAAGAGAAGCTCGTGGTTCGACCTACGAGTGAAACCATTGTGAATCACATGTTTACACAGTGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGTGGGCAAATGTTACAAGATGGGAGATGCGCACTAAACCGTTTGTTAGAACTCTTGAATTTCTTTGGCAAGAAGGCCATACTGCTCATGCAACTCCAGAAGAGGCAGAAAAAGAGGCTATGCAGATGATTGACATCTATACCAGATTTGCTTATGAGCATGCTGCAATACCTGTTGTTCCAGGTCGTAAATCAAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACGATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACAATCTTGGGCAAAACTTTGCCCGTGCCTTTGGAACACAGTTCACAGATGAAAATGGACAAAGGGAGTATGTGTGGCAGACATCATGGGCAATTAGTACCCGTTTTGTTGGAGGTATCATCATGACACATGGAGATGATGCAGGCCTAATGCTTCCCCCGAAGATTGCACCGATACAGGTGGTAATTGTACCTATTTGGAAAAAGGATGATGAAAAAATGGCAGTTCTAAATGCAGCATCATCTGTAAGCGAAGTTCTTCAACGCTCTGGGATTAGAGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTATCAAATGGAAGTGTGGTGATATCCAGGAGAGATATTCCTGGAAAGCAAGGGAAAGTGTTTGGAATCTCTATGGAGCCTTCAAATTTGGAGGCTTATGTCAAAGACAAGTTGGATGAGATACAGTCCTCTCTTTTGGAAAGGGCAATTGCATTTCGAGATAGGTTCATTCCTTTTCTACTATTTTTGGCTTGTGACTCTTCATTCTTCAACATTACCTTGTCTAACATGCTTTGA 1497 0.4603 MASLRLSSFSHLFSSPSTATISRRSPAILRRRRHSRQPRLPPLAASFSAQSVPAETQDRVDNSKNRAPDRVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWESIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTRFAYEHAAIPVVPGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTQFTDENGQREYVWQTSWAISTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDDEKMAVLNAASSVSEVLQRSGIRVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSNGSVVISRRDIPGKQGKVFGISMEPSNLEAYVKDKLDEIQSSLLERAIAFRDRFIPFLLFLACDSSFFNITLSNML. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03888 498 MobiDBLite consensus disorder prediction 23 70 - -
Seca10g03888 498 CDD ProRS_core_arch_euk 78 337 IPR033721 -
Seca10g03888 498 NCBIfam proline--tRNA ligase 73 476 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 Pfam Anticodon binding domain 354 456 IPR004154 -
Seca10g03888 498 SUPERFAMILY Class II aaRS and biotin synthetases 78 341 IPR045864 -
Seca10g03888 498 PANTHER PROLYL-TRNA SYNTHETASE 54 475 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 166 335 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca10g03888 498 CDD ProRS_anticodon_zinc 343 474 - -
Seca10g03888 498 FunFam Proline--tRNA ligase, chloroplastic/mitochondrial 348 472 - -
Seca10g03888 498 Hamap Proline--tRNA ligase [proS]. 72 498 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 Gene3D - 348 471 IPR036621 -
Seca10g03888 498 SUPERFAMILY Class II aaRS ABD-related 343 474 - -
Seca10g03888 498 Gene3D Bira Bifunctional Protein; Domain 2 73 347 IPR045864 -
Seca10g03888 498 FunFam Proline--tRNA ligase 67 347 - -
Seca10g03888 498 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 99 347 IPR006195 -
Seca10g03888 498 PRINTS Prolyl-tRNA synthetase signature 130 148 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 PRINTS Prolyl-tRNA synthetase signature 201 209 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 PRINTS Prolyl-tRNA synthetase signature 171 182 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Seca10g03888 498 PRINTS Prolyl-tRNA synthetase signature 210 221 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03888 Seca-Chr10 81469312 81475941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03888 K01881 - gmx:100788013 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03888 10 81469312 81475941 Seca10g03888 10 81469312 81475941 ECH