Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03875 ATGAAGCCATGTCCAAAACTCAGAAACTCCAATGTTGTTGGGGTTATATTCTCAGTTGTGTTACTGGGATCACTAGGATTGAGGGTAGCAGAATGCAGAGTAGCCAGTGGATTGGATGAACTTGAGTACCCTGCTATCAATTGCCGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAAGCTTTTCAATATGCAATAAGCAATCTAAGTCAGTATGCATATGATGGAGGAGCTTTACTTGTGGTTCCACCTGGGAAATGGCTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTCCTCCATAATGAAGCTGTCATTCTTGCATCTCAGGATGAATCAGAGTGGCCCCACCTTCCTGTTCTACCATCATATGGCAGAGGAAGGGATGCACCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTTGTAATAACTGGCTACAATGGGACAATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAAGGTGAATTGAAACTCACCAGGCCATACATGATTGAGATTATGTTCTCTCATCACATCCAGATATCAAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTAACCATTATTGCACCAATTGACTCCCCAAACACAGATGGAATAGACCCTGATTCTTGTACCAACACTAGGATTGAAGATTGTTATATTGTCTCTGGTGATGATTGTATTGCAATAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCCAACACATAATAATTAGAAGGCTTGAATGTGTTTCTCCAGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGATCTCACAGCAATCAATACTCAATCAGCAGTTAGAATCAAAACTTCAGTTGGTAGAGGAGCATATGTGAAAGATATATTTGTTAGAGGAATGAACTTGAACACCATGAAATATGTCTTTTGGATGACAGGTTCATATGGATCACACCCTGACCCTAGCTTTGATCCTAAAGCACTTCCTAACATTACTGGAATAAATTATAGAGATGTCATTGCAGATAACTGCACATATTCAGCAAGGCTTGAAGGAATTTCTAATGATCCTTTTACAGGAATTTGTATGTCTAATGTGACTATCCATAATGTGGGGAAGAAATTGCAATGGAATTGCACTCATATTGAGGGGGTAACAAGTGATGTGTATCCTAAGCCTTGTGAATTACTGCCAGAGAAAGAAGAGAAATTTGACTGTCCTTTTCCAGATAACACACTGCCCATTGAAAGTGTTAAGTTGAAGACTTGTTCCTTTAAAAATGTCTCATGCTTGTGA 1434 0.3961 MKPCPKLRNSNVVGVIFSVVLLGSLGLRVAECRVASGLDELEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSQYAYDGGALLVVPPGKWLTGSFNLTSHFTLFLHNEAVILASQDESEWPHLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSHHIQISNLTLINSPSWFVHPIYSSDIIIQGLTIIAPIDSPNTDGIDPDSCTNTRIEDCYIVSGDDCIAIKSGWDEYGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTQSAVRIKTSVGRGAYVKDIFVRGMNLNTMKYVFWMTGSYGSHPDPSFDPKALPNITGINYRDVIADNCTYSARLEGISNDPFTGICMSNVTIHNVGKKLQWNCTHIEGVTSDVYPKPCELLPEKEEKFDCPFPDNTLPIESVKLKTCSFKNVSCL. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03875 477 SUPERFAMILY Pectin lyase-like 48 472 IPR011050 -
Seca10g03875 477 Pfam Glycosyl hydrolases family 28 149 429 IPR000743 GO:0004650|GO:0005975
Seca10g03875 477 Gene3D - 38 436 IPR012334 -
Seca10g03875 477 PANTHER PECTIN LYASE-RELATED 21 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03875 Seca-Chr10 81119241 81122166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g03875 11 472 Glycoside Hydrolase AT3G61490 64.831 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03875 - - gmx:100785005 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03875 10 81119241 81122166 Seca10g03875 10 81119241 81122166 ECH
Seca10g03875 10 81119241 81122166 Seca10g03875 10 81119241 81122166 PCT