Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03865 ATGGCAGACACTGAGACTTTCGCCTTCCAGGCTGAGATCAACCAGCTTCTCAGCCTCATCATCAACACCTTCTATAGCAACAAAGAGATTTTCTTGCGAGAAATTATCAGCAACGCTTCCGACGCGTTGGATAAGATTAGATTCGAGAGTCTAACGGACAAGAGCAAGCTAGATGCCCAGCCAGAGCTCTTCATTAGGCTTGTGCCTGACAAGGCCAACAAGACACTGTCCATCATCGACAGTGGCATTGGCATGACCAAAGCAGATTTGGTGAACAATTTGGGCACTATTGCGAGGTCTGGGACCAAGGAGTTCATGGAGGCGTTGCAAGCTGGTGCTGACGTCAGCATGATTGGTCAGTTCGGTGTTGGGTTCTACTCTGCCTACCTTGTCGCCGAGAAGGTCATTGTCACAACTAAGCACAATGATGACGAACAATACGTTTGGGAATCCCAGGCTGGTGGGTCCTTCACTGTTACCCGGGATACTGAGGGTGAGCAACTTGGAAGAGGAACCAAGATTACCCTCTTCCTGAAGGAGGATCAGTTGGAATACTTGGAGGAGAGGAGAATCAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTATCCCATTTACCTTTGGACTGAGAAGACTACCGAGAAAGAGATCAGTGATGATGAAGATGATGAGCCCAAGAAGGAAGAAGGGGACGTTGAGGATGTCGATGAGGAAAAGGAGAAAGAATCCAAGAAGAAAAAGAAGATTAAGGAGGTTTCTCATGAGTGGGAGCTGATCAACAAGCAGAAACCAATCTGGCTGCGAAAGCCAGAAGAGATCACTAAGGAAGAATATGCTTCTTTCTACAAGAGCCTGACCAATGACTGGGAGGATCACTTGGCTGTCAAGCATTTCTCTGTGGAGGGTCAGCTTGAGTTCAAGGCAATTCTCTTCGTCCCAAAAAGGGCACCCTTTGATTTGTTTGACACAAGGAAGAAGATGAACAACATCAAGCTTTATGTCAGGAGGGTGTTCATCATGGACAACTGTGAGGAGCTAATACCTGAATACCTTGGATTTGTGAAAGGTGTTGTTGACTCTGATGACTTGCCACTCAACATCTCTCGTGAGATGTTGCAACAGAACAAGATTTTGAAGGTGATTAGGAAGAATCTTGTGAAGAAGTGCATTGAGATGTTCAATGAGATTGCTGAGAACAAGGAGGATTACAACAAGTTCTATGATGCCTTCTCAAAGAATTTGAAGTTGGGTATCCATGAGGACAGCCAGAACAGGGCCAAATTGGCAGATTTGCTGAGATACCATTCAACAAAGAGTGGAGATGAGATGACAAGCTTGAAGGACTACGTTACCAGAATGAAAGAGGGCCAGAAAGATATTTACTACATCACTGGAGAGAGCAAAAAGGCTGTGGAGAACTCTCCATTCTTGGAGAGACTGAAGAAGAAGGGCTATGAAGTTCTCTTCATGGTGGATGCAATTGATGAGTATGCTGTTGGACAGCTGAAAGAGTACGATGGCAAGAAATTGGTTTCAGCTACAAAGGAAGGATTGAAATTGGATGATGAGACTGAGGAAGAGAAAAAGAAGAAAGAGGAGAAGAAGAAGTCATTTGAGGACCTCTGCAAGGTTATCAAGGACATCTTGGGAGATAAAGTGGAGAAGGTAGTTGTATCTGATAGGATTGTTGATTCCCCCTGTTGTTTGGTGACTGGTGAATATGGTTGGACTGCAAACATGGAAAGGATCATGAAGGCTCAGGCTTTGAGAGACACTAGCATGAGTGGCTACATGTCTAGCAAGAAAACCATGGAAATCAATCCTGATAATGGTATAATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGACAAGTCAGTTAAGGACCTTGCGTTGCTTCTCTTTGAGACTGCCCTCTTGACCTCAGGTTTCAGCCTTGATGATCCCAACACCTTTGCTGCAAGGATTCACAGGATGTTGAAGCTGGGCCTTAGCATTGAAGAGGATGATGCTGGCGGAGATGATGTTGACATGCCTCCATTGGAAGAGAATGGTGCTGAGGAGAGCAAGATGGAGGAAGTGGACTAA 2097 0.4526 MADTETFAFQAEINQLLSLIINTFYSNKEIFLREIISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKANKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTEGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEGDVEDVDEEKEKESKKKKKIKEVSHEWELINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFEDLCKVIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDTSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLALLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIEEDDAGGDDVDMPPLEENGAEESKMEEVD. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03865 698 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 5 695 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca10g03865 698 SMART HKATPase_4 27 182 IPR003594 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Seca10g03865 698 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Seca10g03865 698 Pfam Hsp90 protein 184 691 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca10g03865 698 SUPERFAMILY Ribosomal protein S5 domain 2-like 262 517 IPR020568 -
Seca10g03865 698 CDD HATPase_Hsp90-like 14 202 IPR020575 -
Seca10g03865 698 Coils Coil 522 542 - -
Seca10g03865 698 MobiDBLite consensus disorder prediction 215 247 - -
Seca10g03865 698 FunFam Heat shock protein 90 alpha 517 668 - -
Seca10g03865 698 Coils Coil 233 256 - -
Seca10g03865 698 FunFam Heat shock protein 90 alpha 261 429 - -
Seca10g03865 698 Gene3D - 2 228 IPR036890 -
Seca10g03865 698 Gene3D - 261 429 - -
Seca10g03865 698 FunFam Heat shock cognate protein 2 228 - -
Seca10g03865 698 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5 213 IPR036890 -
Seca10g03865 698 SUPERFAMILY HSP90 C-terminal domain 541 663 IPR037196 -
Seca10g03865 698 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Seca10g03865 698 MobiDBLite consensus disorder prediction 671 698 - -
Seca10g03865 698 PIRSF HSP90_HTPG 1 698 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca10g03865 698 Gene3D - 517 668 IPR037196 -
Seca10g03865 698 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Seca10g03865 698 FunFam Heat shock protein 90 alpha 430 516 - -
Seca10g03865 698 Gene3D - 430 516 - -
Seca10g03865 698 Hamap Chaperone protein HtpG [htpG]. 2 664 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Seca10g03865 698 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03865 Seca-Chr10 80967136 80970243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03865 K04079 - gmx:100811234 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03865 10 80967136 80970243 Seca10g03865 10 80967136 80970243 ECH