Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03830 ATGAGAGAATATGAATTCCCATGTTGTGAGCTCAACTTCTGGTTATTTCTGATTATATGTCTAGTGCTTGTGACACTAGCAGGCATTGCATCAGGTCTAGCTCTAGGACTATTATCATTCAGCCAAGTTGATCTTGAGGTCCTCATTAAAGCAGGCCGTCCAAAAGACAGAAAGCATGCAGAAAGGATTCAACCTCTTGTAAAGAATGGACATTTTGTCCTGTGTACCCTTCTTCTAGGAAAATCACTGGCTATGGAGGCACTGCCTATTTTTATGGATGCAATCATCCCAGCTTGGTTTACTATTCTCATGTCAGCACCCTTGGTGACTGTATTTGCAGAGATTTTACCTCAAGCTGTATGCTCTCGATATGGATTAACTTTAGGAGCAACAATGGCTCCTGTTATTCAACTTCTTCTGCTGATTTTCTTCCCTATAACCTATCCAGCTAGTAAGGTGCTGGATTGGGCTCTAGGGAAAGAGCATTCAGTTCTTTTGAGAAGATCAGAGTTGAAAACATTTGTGGACTTACATGCAAATGAGGCAGGGAAAGGTGGAGAGTTGTCACATCATGAAACTTCTATAATCACAGGTGCTATGGATTTGACTCAGAAGACAGCTAAAGATGCAATGACACCCATATCTGAAACTTTTTCTCTTGATATAAATTCCAAACTTGATATGCATACAATGACACAAATAATGAGTAAAGGTCACAGTCGAATACCTATACATTCTGGACACCCTACAAATATTGTTGGCCTCATCTTGGTTAAAAATTTAATCTTCTCCCGCCCAGAAGATGAGACCCCGATCAAGAATTTGATCATCAGGAAAATTCCTAGGGTTTATGAAACTTGGCCACTATATGAGATATTGAATCAATTCAAGAAAGGTCACAGCCATATGGCTGTTGTCTTGAAGAGCAACATGGACACAGAGTGTAGTGCAGCTCATGCTGTGGGTACACCTACCATTTTGAATATAATTACTAAAAAATTATCAAACCGGGCTCAAATTAGTGCAGAATCTAATCCTTCATATGTCCTGGAAATGAGTCAGACAAGTTCTATTCATGAATCCACTTTGTATTCTAGTGAAATGGAATTTCACAGTCCTTCATTGGAACATGTCATGGACCTAGACAATCAAGAATCCAGACAGTGTGGGCAAGAAATTGGATATATCACACAAGAACAGATAGAGTCTCTTTCAGCTGTTCTGGATGAGGAGGTGATTGGCATCATTACAATGGAGGATGTCATGGAGGAACTGTTACAGGTTAGCACAGTAATGATGATCATCATATTCCTAATAATGAGATCAGACCCATTTCTATTCCTTTTTTTAGCCTATATTACAGATTGTGTAACATGTAGAACTGAAATCTGTGTCATTGATTGGAACCACAAGGCTATTTATACAAACCATTAG 1434 0.3912 MREYEFPCCELNFWLFLIICLVLVTLAGIASGLALGLLSFSQVDLEVLIKAGRPKDRKHAERIQPLVKNGHFVLCTLLLGKSLAMEALPIFMDAIIPAWFTILMSAPLVTVFAEILPQAVCSRYGLTLGATMAPVIQLLLLIFFPITYPASKVLDWALGKEHSVLLRRSELKTFVDLHANEAGKGGELSHHETSIITGAMDLTQKTAKDAMTPISETFSLDINSKLDMHTMTQIMSKGHSRIPIHSGHPTNIVGLILVKNLIFSRPEDETPIKNLIIRKIPRVYETWPLYEILNQFKKGHSHMAVVLKSNMDTECSAAHAVGTPTILNIITKKLSNRAQISAESNPSYVLEMSQTSSIHESTLYSSEMEFHSPSLEHVMDLDNQESRQCGQEIGYITQEQIESLSAVLDEEVIGIITMEDVMEELLQVSTVMMIIIFLIMRSDPFLFLFLAYITDCVTCRTEICVIDWNHKAIYTNH. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03830 477 FunFam DUF21 domain-containing protein 190 323 - -
Seca10g03830 477 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Seca10g03830 477 PANTHER METAL TRANSPORTER CNNM 3 428 IPR045095 GO:0010960
Seca10g03830 477 SUPERFAMILY CBS-domain pair 195 426 IPR046342 -
Seca10g03830 477 Gene3D - 192 335 IPR046342 -
Seca10g03830 477 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Seca10g03830 477 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03830 Seca-Chr10 79721962 79726043 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03830 K16302 - gmx:100791387 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03830 10 79721962 79726043 Seca10g03830 10 79721962 79726043 ECH