Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03645 ATGGCTGCAGAGGAAGAGAGCGCGGTGAAGGAGCCTTTGGATCTCATAAGACTCAGCCTCGACGAGCGTATCTACGTCAAGCTCCGTTCTGACAGAGAGCTTCGCGGCAAGCTTCATGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACTGTGGAAATTGATGATGAGACATATGAAGAAATTGTGAGGCAGACTACAAAGCGGACAGTTCCTTTTCTGTTTGTTAGGGGAGATGGGGTGATATTGGTTTCCCCACCACTGAGGACTGCATGA 297 0.4613 MAAEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRQTTKRTVPFLFVRGDGVILVSPPLRTA. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03645 98 Gene3D - 2 95 - -
Seca10g03645 98 ProSiteProfiles Sm domain profile. 11 97 IPR047575 GO:0003723
Seca10g03645 98 SMART Sm3 14 93 IPR001163 -
Seca10g03645 98 FunFam U6 snRNA-associated Sm-like protein LSm3 2 95 - -
Seca10g03645 98 SUPERFAMILY Sm-like ribonucleoproteins 11 94 IPR010920 -
Seca10g03645 98 CDD LSm3 11 93 IPR034105 GO:0000398|GO:0003723
Seca10g03645 98 Pfam LSM domain 16 93 IPR001163 -
Seca10g03645 98 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 97 IPR040002 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03645 Seca-Chr10 69727997 69731728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03645 K12622 - egr:104449601 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03645 10 69727997 69731728 Seca10g03645 10 69727997 69731728 ECH