Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g03602 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGACATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTCATAACAAAGCTTGTAATGTTGCGTGCCAAAAATCAGGCTCTTCTCCAAATGCAAGATATTCCGTCTGCAGTTAGTGCTCTACAATTTTATGCTAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATATCCAGTTTTCCTCACATCAAGAACTAACTACGATGGATCAAAGTCAAGGGCGAGAAGATGAGCCAAATCGAATTCTCTTAGTTACGGTTCACCACATGCTGTATCCTATAACAGTGGATGTGCTACATCAAGTGTTTTCTCCCCATGGTTATGTGGAGAAGATTGTTACGTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCCCGCCAAAGTGCTGTTACTGCCAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTAAACTACAATAATGATCGTTCAAGGGACTTTACAAACCCAAATCTGCCTACAGAGCAGAAAGGCCGATCTTCTTCCCAACCTGGATATGGCGATGGAGGAAGCATGTATGGGGTTCAAGGTTCCAGGGCAGTTGGATTCTCACAGATGGCCAATGCTGCAGCAATTGCAGCTGCCTTTGGTGGTGGTTTGCCTCCTGGAATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAACCCTGATAGAATCGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTGCATTTTCTGAAGGGAGCCATGCTGTTTGGGAAACGATTGGAAGTCAACTTCTCGAAGCATGCAAACATAACCCAAGGTGCTGATACACATGAGTATGTGAATTCAAATCTCAACCGATTCAATCGTAATGCTGCTAAAAACTACCGGTATTGCTGCTCGCCAACAAAGATGATTCACTTGTCCACCCTCCCACAAGACATCACTGAAGAGGAGATTGTAAGCCTTCTGGAGGAGCATGGAACCATTGTGAACAGCAAGGTCTTTGAGATGAATGGAAAAAAGCAGGCTCTTGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGCCCACTTTCTGGCTCAGTCGTCCGCATCTCCTTTTCCCAGTTGCAAAATATATGA 1329 0.4379 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVSALQFYANVQPSIRGRNVYIQFSSHQELTTMDQSQGREDEPNRILLVTVHHMLYPITVDVLHQVFSPHGYVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSSQPGYGDGGSMYGVQGSRAVGFSQMANAAAIAAAFGGGLPPGITGTNERCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHANITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g03602 442 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Seca10g03602 442 Gene3D - 98 201 IPR012677 -
Seca10g03602 442 Pfam RRM-like domain 97 174 IPR021790 -
Seca10g03602 442 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 438 IPR006536 GO:0003723|GO:0005634|GO:0006397
Seca10g03602 442 CDD RRM4_PTBPH3 358 436 - -
Seca10g03602 442 SUPERFAMILY RNA-binding domain, RBD 254 436 IPR035979 GO:0003676
Seca10g03602 442 CDD RRM2_PTBPH3 96 183 IPR034796 -
Seca10g03602 442 CDD RRM3_PTBPH3 254 329 IPR034797 -
Seca10g03602 442 CDD RRM1_PTBPH3 6 80 IPR034795 -
Seca10g03602 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 431 IPR000504 GO:0003723
Seca10g03602 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Seca10g03602 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 439 IPR000504 GO:0003723
Seca10g03602 442 MobiDBLite consensus disorder prediction 186 213 - -
Seca10g03602 442 SMART rrm1_1 101 170 IPR000504 GO:0003723
Seca10g03602 442 SMART rrm1_1 366 435 IPR000504 GO:0003723
Seca10g03602 442 SMART rrm1_1 7 76 IPR000504 GO:0003723
Seca10g03602 442 SMART rrm1_1 256 325 IPR000504 GO:0003723
Seca10g03602 442 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Seca10g03602 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 329 IPR000504 GO:0003723
Seca10g03602 442 MobiDBLite consensus disorder prediction 186 211 - -
Seca10g03602 442 Gene3D - 252 347 IPR012677 -
Seca10g03602 442 Gene3D - 350 442 IPR012677 -
Seca10g03602 442 Gene3D - 1 97 IPR012677 -
Seca10g03602 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 340 - -
Seca10g03602 442 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 420 - -
Seca10g03602 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g03602 Seca-Chr10 67667000 67674050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g03602 K14948 - gmx:100798234 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g03602 10 67667000 67674050 Seca10g03602 10 67667000 67674050 ECH
Seca10g03602 10 67667000 67674050 Seca10g03602 10 67667000 67674050 PCT