Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02818 ATGGCTCTTAACCTTGTGAAGCTTTCAACCTCATTCCTTTTACTCTTCTTTGGGAACCCATTTCCAATCGCTGAGTCAAGAATCACCGAATCCCCAGAGCATCCATTTACCAAAACCCTCCAAAACCTCGAGGGCGTTCACAAGGGACAAACAGTGAAAGGCGTGAGCGACCTTAAAAATTACCTCCAAAAATTTGGCTACCTAATAATAAGGAATGACCAATATTCAAAAACCGCATTCTCCGACCACTTTGATGAAAACTTGGAGTCTGCCCTCAAAGATTTCCAAAAGTACCATCACTTAGATACCACCGGTCGCATAGACACTCCAACCATCGATACAATGAGCCTCCCACGTTGTGGAGTCCCTGATATAATCCCACGTCGCAATAAACGTAACGGTTTGGTGATAGTTGCTAACTACACCTTCTTCCCAGGATCACCAAAATGGGATGACTCCAAGAGGGCCCTAACATATACATTCAAATCAAGTGCTGACGTGTTGAGCATGGATGTCGTGAGACAAGCGTGTGAGAGTGCCTTCAAAAGCTGGTCACAAGTCACAGACTTCACCTTCACTGAAACTAATGGTGACTCAGCTGACGTGGTGATTGGGTTCCACCGTGGCGACCATGGCGATGGCTACCCCTTTGATGGACCAGGCATGGTGCTGGCTCACACGTTTGCACCACAAGATGGGAGGCTTCATTATGATGCAGATGAGCAATGGAGCACCAACCCAACGGGTCTTCATGTTGAGTCGTGGTGGAGGAGGAGGAGGAGGAGGCCACGTCCAAGGAGTACGACACAGATTGATTTGGAAACAGTGGCTTTGCATGAAATGGGTCATCTTATTGGGCTTGGACACAGTAGCAACCCGGACTCGGTTATGTATCCCACTTATGGGGGTGTGAGGAGGAATCTGAAGCAGGATGATATCGATGGTATACGGGCTCTGTATGGGTATAACTAA 972 0.4763 MALNLVKLSTSFLLLFFGNPFPIAESRITESPEHPFTKTLQNLEGVHKGQTVKGVSDLKNYLQKFGYLIIRNDQYSKTAFSDHFDENLESALKDFQKYHHLDTTGRIDTPTIDTMSLPRCGVPDIIPRRNKRNGLVIVANYTFFPGSPKWDDSKRALTYTFKSSADVLSMDVVRQACESAFKSWSQVTDFTFTETNGDSADVVIGFHRGDHGDGYPFDGPGMVLAHTFAPQDGRLHYDADEQWSTNPTGLHVESWWRRRRRRPRPRSTTQIDLETVALHEMGHLIGLGHSSNPDSVMYPTYGGVRRNLKQDDIDGIRALYGYN. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02818 323 PRINTS Matrixin signature 308 321 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca10g02818 323 PRINTS Matrixin signature 115 128 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca10g02818 323 PRINTS Matrixin signature 200 228 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca10g02818 323 PRINTS Matrixin signature 276 301 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca10g02818 323 PRINTS Matrixin signature 177 192 IPR021190 GO:0004222|GO:0006508|GO:0008270
Seca10g02818 323 FunFam Metalloendoproteinase 1 45 323 - -
Seca10g02818 323 Pfam Matrixin 149 321 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Seca10g02818 323 CDD ZnMc_MMP 149 321 IPR033739 GO:0008237|GO:0008270
Seca10g02818 323 SMART col_5 146 322 IPR006026 GO:0006508|GO:0008237|GO:0008270
Seca10g02818 323 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 323 - -
Seca10g02818 323 Gene3D Collagenase (Catalytic Domain) 43 323 IPR024079 GO:0008237
Seca10g02818 323 SUPERFAMILY PGBD-like 48 125 IPR036365 -
Seca10g02818 323 ProSitePatterns Matrixins cysteine switch. 118 125 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Seca10g02818 323 PANTHER MATRIX METALLOPROTEINASE 35 321 - -
Seca10g02818 323 Pfam Putative peptidoglycan binding domain 54 115 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02818 Seca-Chr10 36859137 36860108 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02818 - - mtr:11428439 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02818 10 36859137 36860108 Seca10g02818 10 36859137 36860108 ECH