Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02654 ATGAAGTTTGGAAAAGAATTTGCATCACAAATGGTGCAAGAATGGCAAGAGGCATACATGGATTACAACCATCTCAAAGCAATTCTCAAAGACATGTTAAGGTCTAGACCACAAAATTCATCAGCACCAGTGGCATCCACTCCAAAAGGCACTCTGAAAAGAAGGGTGTCCCTCTACAAATCCTTTAGTGGGCTTGCAATCCGATATAGAGAGTCACCTAGGAATGATGAGGATGAAGTTATACTTGTTCATGCAGAAGACAGAGAAGGTTCAGAGGAGTTTTACAAAACCATATTCCTTAAATCTGCTGAAGGAGGGGCAGAACAAGAGCTTATGTTTTTTAACAAGCTTGATGATGAGTTTAACAAGGTCAATGTCTTCTACAAGAAGAAGGTGAATGATGTCATAGAGGAGGCAGATGATTTGAGTAAGCAAATGAATGCTTTGATTGCTCTCCGAGTAAAGGTGGATAAGGTGGTGAGATTCAGAAGTTCTACTAGCAATGAAACCTCAACTTCAGCTTCCATGGAGCATCATATAAATGATAGCAGACTTGGTCGCTCACATTTACACATGGATGTGATTCAAGAAATTGAGATGAGCAATGACACTAAATTGGCAGATGAAAGTAGTAGTCATGTGGAACAACCCAATTCTAAAACATCTTTGCGGGGTTTTAGACCAGCATCTTTGGAGATCCTCGACCATGTAAAGATCAATGTGATCACACCTGAAACTCCAGTATCCACAGTAAAAGGGCTGGTCTTGTCTTCAAACCCTGACCTGTCATTCAGCAAGAAAGAGCTAAGGAAAGTGGAGGAACAAATGAGCATAGCATTGAAAGAATTCTATCATAAGCTTCAACTTCTGAAACGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTCACTGGAAGGAATGCATCAAAGGAATACTTAAAGGTGGTTGAAAAATCTTACTTTGGCAGTTCAGATGAGGTTAATAAACTTATGGAAAAGGTGGAATCTGCCTTCATTAAGCACTTTGCAAATGGAAATCGCAGAAAAGGAATGAACACATTGAGACCAACTGCTAAAAGAGAACGACATAGAGTAACATTCTTATTAGGACTGTTGACTGGCTGCTCACTTGCTCTCATTGTGGCACTTATGGTTCTAATACAAGCAAGAAATATTCTAAAAACAAATAGTGCAGACCGTGTTAGATACATGGACAACATATTTCCACTTTACAGTCTTTTTGGATACATCATCTTGCATATGCTCATGTACTCAGCAAATATATACTTCTGTCGTCGTTTTAAAATCAACTATCCATTTATATTTGGCTTCAAGCAAGGAACAGAATTGGGCTACAGAGAAGTCTTTCTTTTGAGTTCTGGCCTTGCAGTACTGGCATTGGCTGCTGTCCTTTCAAATTTGGATATGGAGATGAACCCCAGAACAAAAAGTTTCTCAGAATTTACAGAATTAGTCCCTTTAGGCCTTGTTGCTGTTTTGCTTCTTATAACATTTTGTCCCTTCAACATTATATACAAATCCAGCCGCTTCTTCCTTATTCAAACTGCATTGCATTGCATTTGTGCTCCTCTTTACAAGGTCAACCTCCTAGATAATTTCTTCGCTGACCAGCTCACCAGCCAGGTGCAGGCATTCAGGAGTTTGGAATTCTATGTTTGCTACTATGGCTGGGGAAACTTCAAGATGAGATCAAACAGTTGCCTTAAAAGTGATGTTTATAAAACATTTTATTTCATTGTAGCCATTATTCCATTCTGGATCCGTTCTCTCCAGTGCCTTCGACGCTTATTAGAGGATAGAGATATAATGCATGGGCTTAATGGGCTTAAACACATTTCAACAATAGTTGCACTTGCGATGAGGACTAGTAATGAGTTGAGCAGAAGAAGAACAATTTGGACAATTTTGGCTGCATCATCTTCAGGCATTGCAATGATTGCTAACACGTATTGGGACATTGTCATGGATTGGGGTTTACTTCGAAGGAATTCAAGAAATCCCTGGCTGAGAGATAAACTCAGTGTACCAAGAAAAAGTGTGTATTTTGTTGCTATGGTGTTGAATGTTGTACTACGACTTGCATGGATGCAATCGGTTTTAGGCATTAGGCAAACCCCTTTCCTTCATAGAACAGCTTTAACTGCTCTAGTTGCATGCTTGGAGATCCTTCGTCGTGGCATTTGGAATTTCTTCAGGTTAGAGAATGAGCACTTAAATAATGTAGGCAAGTACCGGGCATTTAAGTCAGTGCCTCTTCCATTTAATTATGATGATGATGATGAAGAGAGCAGGGCAAGATGA 2346 0.3947 MKFGKEFASQMVQEWQEAYMDYNHLKAILKDMLRSRPQNSSAPVASTPKGTLKRRVSLYKSFSGLAIRYRESPRNDEDEVILVHAEDREGSEEFYKTIFLKSAEGGAEQELMFFNKLDDEFNKVNVFYKKKVNDVIEEADDLSKQMNALIALRVKVDKVVRFRSSTSNETSTSASMEHHINDSRLGRSHLHMDVIQEIEMSNDTKLADESSSHVEQPNSKTSLRGFRPASLEILDHVKINVITPETPVSTVKGLVLSSNPDLSFSKKELRKVEEQMSIALKEFYHKLQLLKRYSFLNLLAFSKIMKKYDKVTGRNASKEYLKVVEKSYFGSSDEVNKLMEKVESAFIKHFANGNRRKGMNTLRPTAKRERHRVTFLLGLLTGCSLALIVALMVLIQARNILKTNSADRVRYMDNIFPLYSLFGYIILHMLMYSANIYFCRRFKINYPFIFGFKQGTELGYREVFLLSSGLAVLALAAVLSNLDMEMNPRTKSFSEFTELVPLGLVAVLLLITFCPFNIIYKSSRFFLIQTALHCICAPLYKVNLLDNFFADQLTSQVQAFRSLEFYVCYYGWGNFKMRSNSCLKSDVYKTFYFIVAIIPFWIRSLQCLRRLLEDRDIMHGLNGLKHISTIVALAMRTSNELSRRRTIWTILAASSSGIAMIANTYWDIVMDWGLLRRNSRNPWLRDKLSVPRKSVYFVAMVLNVVLRLAWMQSVLGIRQTPFLHRTALTALVACLEILRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDDDDEESRAR. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02654 781 Coils Coil 262 282 - -
Seca10g02654 781 Pfam SPX domain 1 324 IPR004331 -
Seca10g02654 781 ProSiteProfiles SPX domain profile. 1 322 IPR004331 -
Seca10g02654 781 ProSiteProfiles EXS domain profile. 583 779 IPR004342 GO:0016020
Seca10g02654 781 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 774 - -
Seca10g02654 781 Pfam EXS family 416 753 IPR004342 GO:0016020
Seca10g02654 781 Coils Coil 132 152 - -
Seca10g02654 781 CDD SPX_PHO1_like 2 318 IPR034092 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02654 Seca-Chr10 33445047 33450552 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02654 - - gmx:100795104 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02654 10 33445047 33450552 Seca10g02654 10 33445047 33450552 ECH