Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02193 ATGAACGTCGATCATGATCAACCTCACACCGCCGCCACGAAGGCTCAAACATTGCAGTCCCTTACGGCGGGCCCTCTCTCCTCCTCGGTGGCCAAGCTCGCCGCTTCCTCGCGGTGCATCCCTTCCGAGAAGGACTTCTTTTTTTACCGCAACTTCGAGGAATTCAAGGTCCCCGTCGAGCAAATCACGAGGGAATCACAGTCGATGCTCGAAGCCATTGGCGCCGCCGCGAACATGGCCTTCCCCGCTGACATTGACGACGCCTATGACTGGCTGGTGAACGTGAACGATGACGTTTTGGAGCGGTTTGACGTGTCCGCCGACGAGTTCCGGAAGGTTCGGGAAGAGGAGGAGGAGACGGGGCGTCCCGCGCAATCTTCGATGGTGGAAGATGGGTTTGAGTTGGTTAGTAGGAGGAAGAAGAAAGTGGGAAGAGAGAAAGTGACGATGGATTCAACGAGTTTGGCACCGGCAGAGGGTGTTAAGGTAGCAACGAAGGATAAGAAGACGATGGGGCCAAAGCCAAAGGTGCCATTTCATATACCGACGATTAGGAGGCCACAGGATGAGTATAACATACTGGTTAATAATGGCAACACACCTTTTGAGCATGTTTGGTTGCAGAGGAGTGAAGATGGTCAGAGGTTTATTCATCCACTGGAAAAGCTTTCTGTTTTGGATTTTGTTGATAAAGACCTTGGAGATGTTGTGCCAGAGAAGCCTCCCTCAATAGAAAGCACCCCTTTCAAGCTTGTGGAGGAAGTCAAAGATTTGAAGGAGTTGGCTGCTAAGCTGCGTTCCGTCAATGAATTTGCGTTCTTTGGAGGATATAGTTCTTCAATTTTTCATTTGCCTATGGATGCTGTTGATTTGGAACATAATCAGTATCGTTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACAAGGACTGAAGACTTCATTGTTGATACGTTGAAACTTCGCATTCATATTGGGCCTTATCTAAGGGAAGTCTTCAAGGACCCTGCCAAGAGGAAGGTCATGCATGGTGCAGATCGAGATATTGTGTGGCTTCAACGAGACTTTGGCATTTACATTTGTAATTTGTTTGACACTGGCCAGGCTTCAAAGGTATTAAAAATGGAGAGAAATAGTTTGGAGTACCTTCTGCATCATTTTTGTGAGGTTACTGCAAACAAAGAATACCAGAATGCTGATTGGAGATTACGCCCTCTTCCTGAAGAGATGCTAAGATATGCCAGAGAAGATACACACTATCTGTTGTACATATATGACTCAATGCGGATTAAGTTATTTTCCTTGTCAAAGGAGTCCGAAAGTTCTGATCCTCCTCTGGTAGAGGTCTACAAGCGCAGTTATGATGTCTGCATGCAGCTATATGAGAAAGAACTTCTGACAGAACACTCCTACCTTCATATATATGGGCTGCAAGGGGCTGGTCTTAATGCTCAACAGCTTGCCATTGTTTCAGGGCTGTGTCAATGGCGGGACATTGTTGCTCGTGCAGAGGATGAGAGTACTGGATATGTATTGCCAAATAAATCTGTTATTGAAATCGCTAAGCAGATGCCTGTCACTACAACCAAGCTACGGCGGTTGGTGAAGTCAAAGCACCCATATGTTGAACACAATCTTGATACTGTTGTCAACATCATCAGGAATTCTATTCAGAATGCTGCTGCTTTTGAAGAAGCTGCTCAACAATTGAAAGAAGGGCATGCTGCCACTGCATCAGATGTAGTACCTGTTACAGATGGAACTGAAGATCCATTACTCCATACACAAAATCCAAAGGAATCTTTTCAGCATCAAGATACAGATGTACAAATAAAAATTAAGTCCGATAGTCTCACATCTGACCTCCCAAGGGACAATCTCACTATATCAGAGCAGAATAGGGATGCAAATGTCGGTGCACTATCTACATTGAAGGGAAATGGAGCAACTGTTCAGGTGCTGAAAAAGCCTGCTGGTGCTTTTGGGGCCCTGTTGGGGAATTCAGCTTCAAAGAGGAAGTTTGGTCCTGATAAGGGCAAGGAAGAGATCAAGCTAGAGCAGATTAGATCCTCAGTCAATCTTCCTTTCCATTCATTTTTGGGTAGCAGTGAGAAGACAAAGCCTGTAGTAGAAACCCCTAGTGTAGCATCTGAAATGTCAGATCCACAGAAACCTGTTTCTGATCCAGCTTCCACCTCCACTCTAGATGAGATTATAATGCTAGACTCTGATACTAGTGCAGAGGATATGGAGCAGAATAACCTAGAAAACCCCAATGAACACAGGGATAAAAGTTCTAGTGTGTCAACTTCGGGAAAAGAGGATGAAGATGAGCCAATGTCTCTTTCGGAATTGTCATCCAACCTTCAAAAGTGCTTTCAGTCAAACAATCAAAATAACAAAACCAGACAGCCCAAGAAAACTGAACAACCCAGTGGCTTATTGCAGCTGAAGCCATTTGATTATGAGGCAGCAAGGAAACATGTTAAGTTTGGAGAAAATACAAAGGGTGCATCTTCCCGGAGTTGTGACGGTCAAATGGAAATGGAGGACTCAGGTGGCAAGAAGAAGCGTTCAACAATAGGACAAGGGCAACCAAGTGATTTGACTACACAATTGCCGCAAGGTAGAAGACGTCAGGCATTTCCAGCTTCTGGAAATCGTAGTGCAACATTCCGCTGA 2685 0.4521 MNVDHDQPHTAATKAQTLQSLTAGPLSSSVAKLAASSRCIPSEKDFFFYRNFEEFKVPVEQITRESQSMLEAIGAAANMAFPADIDDAYDWLVNVNDDVLERFDVSADEFRKVREEEEETGRPAQSSMVEDGFELVSRRKKKVGREKVTMDSTSLAPAEGVKVATKDKKTMGPKPKVPFHIPTIRRPQDEYNILVNNGNTPFEHVWLQRSEDGQRFIHPLEKLSVLDFVDKDLGDVVPEKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAFFGGYSSSIFHLPMDAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHIGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASKVLKMERNSLEYLLHHFCEVTANKEYQNADWRLRPLPEEMLRYAREDTHYLLYIYDSMRIKLFSLSKESESSDPPLVEVYKRSYDVCMQLYEKELLTEHSYLHIYGLQGAGLNAQQLAIVSGLCQWRDIVARAEDESTGYVLPNKSVIEIAKQMPVTTTKLRRLVKSKHPYVEHNLDTVVNIIRNSIQNAAAFEEAAQQLKEGHAATASDVVPVTDGTEDPLLHTQNPKESFQHQDTDVQIKIKSDSLTSDLPRDNLTISEQNRDANVGALSTLKGNGATVQVLKKPAGAFGALLGNSASKRKFGPDKGKEEIKLEQIRSSVNLPFHSFLGSSEKTKPVVETPSVASEMSDPQKPVSDPASTSTLDEIIMLDSDTSAEDMEQNNLENPNEHRDKSSSVSTSGKEDEDEPMSLSELSSNLQKCFQSNNQNNKTRQPKKTEQPSGLLQLKPFDYEAARKHVKFGENTKGASSRSCDGQMEMEDSGGKKKRSTIGQGQPSDLTTQLPQGRRRQAFPASGNRSATFR. 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02193 894 CDD Rrp6p_like_exo 245 453 - -
Seca10g02193 894 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 23 893 IPR045092 GO:0000175|GO:0000467
Seca10g02193 894 Pfam 3'-5' exonuclease 288 432 IPR002562 GO:0003676|GO:0006139|GO:0008408
Seca10g02193 894 SMART 35exoneu6 249 434 IPR002562 GO:0003676|GO:0006139|GO:0008408
Seca10g02193 894 MobiDBLite consensus disorder prediction 859 894 - -
Seca10g02193 894 MobiDBLite consensus disorder prediction 783 812 - -
Seca10g02193 894 SUPERFAMILY HRDC-like 467 560 IPR010997 GO:0000166|GO:0044237
Seca10g02193 894 FunFam Protein RRP6-like 2 isoform A 183 469 - -
Seca10g02193 894 Gene3D - 183 469 IPR036397 GO:0003676
Seca10g02193 894 ProSiteProfiles HRDC domain profile. 484 564 IPR002121 GO:0003676
Seca10g02193 894 MobiDBLite consensus disorder prediction 706 894 - -
Seca10g02193 894 SUPERFAMILY Ribonuclease H-like 184 438 IPR012337 -
Seca10g02193 894 Pfam HRDC domain 487 554 IPR002121 GO:0003676
Seca10g02193 894 MobiDBLite consensus disorder prediction 717 754 - -
Seca10g02193 894 SMART hrdc7 484 563 IPR002121 GO:0003676
Seca10g02193 894 MobiDBLite consensus disorder prediction 755 781 - -
Seca10g02193 894 Gene3D HRDC domain 470 566 IPR044876 -
Seca10g02193 894 FunFam Putative exosome component 10 471 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02193 Seca-Chr10 25133708 25143998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02193 K12591 - gmx:100815329 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02193 10 25133708 25143998 Seca10g02193 10 25133708 25143998 ECH