Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02179 ATGGAATTAGCTGTTTCTCCACAAGTACAAAAGCAGAATTTGCAGACATCAGGTTGCAAATTTTTGTCGGCTCAGTCCCACAAAGACCTGTGGCTTGTTGTGCGGGAAGGATCTCTAACTGATGTAGAGTTGGCCTTGGCTCAATTGAAGAAAAGTGGGGGAAATATCAATTTGAGGAATGCTTTTGGGTTGACTCCCCTTCATATAGCAACATGGAGAAATCACATCCCCATTGTAAGGAGACTTCTTGCAGCTGGTGCAGATCCCAATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGAGCTCTGCATTTTGGTCATCTTGCTGTGGCAAGCATCCTTCTTCAGCATGCTGCCTCTACTACATTGGAGGACTCTAAATGTCGAATACCTGCAGATCTTTTATCTGGCCCTGTATTTCAAATTTTTGAAAATGACCAAGATTCAGTGGTGACTGAGGTCTTTAGTTGGGGAAGTGGCACAAATTATCAGCTTGGAACTGGAAATGCACATATTCAGAAGTCACCATGCAAAGTTGATTCACTTAATGGTACATTGATAAAACTGATTTCTGCTGCAAAGTTCCATAGTGTGGCAGTTACTGATCGTGGGGAAGTGTATACTTGGGGGTTCGGAAGGGGGGGCCGTTTAGGGCACCCTGATTTTGACATACACAGTGGTCAAGCTGCAGTCATCACTCCTCGTGCAGTGACTGGTCTGGGTCATCGTAGAGTGAAGGCAATTGCTGCAGCTAAGCATCATACAGTTATTGCTACTGAAGGTGGGGAAGTTTTCACCTGGGGATCCAATAGAGAGGGACAGCTTGGGTACACTTCTGTAGATACACAACCCACACCTCGACGAGTGACTTCTTTAAGAGCAAAAGTCATTGCTGTTTCTGCAGCGAACAAGCACACAGCCGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACATCAAACTCAGCATCTAATTACACCCCACGTGTGGTCGAATCCTTGAAGGGAAAGACATTAACCAGAGTTTCTGCTGCAAAATATCATACAGTTGTGTTAGGTTCAGATGGAGAGGTATACACTTGGGGTCATCGACTTGTTACTCCAACATGTGTAATCATTAATAGGAACTTAAAGAAAAATGGAAGCAATCCTTTAAAGTTTCATCGCATGGAACGACTTCATGTGGTTTCTATAGCTGCAGGAATGGTACACAGCATGGCTCTTACTGATGATGGTGCATTATTTTATTGGATCTCCTCAGATCCTGATCTTAGATGCCAACAGTTATATGCAATGTGTGGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGATTGCAGCAGCCACAGCTACAGGTGATGTTTATGTGTGGGATGGCAAAAGTAAGGATAAGTCACCTGTTGTAACTCGGTTGCATGGTGTAAAGAGAGCTACTTCAGTTGCAGTTGGTGAAACACATTTACTGATTGTGGCTTCCCTTTATCATCCTTTCTATCCTCTCGATGTGACTGGGAATTCTCAGAAGCATAAGTTGAATAACAGGGATGATATGAAAGAGTTAAATGAAGACATTTTATTTGAAGATATGGAATCCAATAAATATGATACATTTGGGCAGAGATCTGTACCCAGCTTAAAAAGTCTTTGTGAAAAAGTAGCAGCAGAATATCTAGTAGAGCCAAGAAATGCCATACAACTGCTTGATATTGCTGATTCTCTTGGAGCAGATGGTTTGAAGAAGTATTGTGAGGAGATTGTTATGCGTAACCTTGACTATGTATTTACCATTTCATCACATGCTGTTTCAAGTACTTCACCAGATGTTCTGGCTAATCTTGAAAGGTCATTAGACCAGAAATCATCTGAGTCATGGAGTCACCATCAGCTCCCTTGTCCAACTGCTACTTTCCCTGTCATCATTAATAGTGAAGAGGATGATAGTGATTTAGAGCTTCAAAAGACTTGTGGAAAATCCATGAAAATGTCTGCATTGAAATTGGAGAAAGATCAGAGAGTAGATTCCTTTCTGCAGCCCAAGGATGATCCTAATCAAGGAGTCTCCAAGGTAGTTCGAGCTTTAAGGAAGAAGTTGCAGCAGATTGAGATGCTAGAAGCTAAGCAGTCTAATGGATATCTTCTTGATGACCAGCAGATTGCAAAGCTTAAATCTAAATCAGCAGTCGAGAAATCACTGTCAGAACTAGGTGTTCCTGTTCAGACTTTTCAGGATAAAGAATTGCCCTCTGTACTGCTAGAAAGGAAAAGTAATAAGAAGGGTAAAATTTCAAGAAAACAAAGGAGAAAGAGCAGCAAACCAAGTGTAGAACAGACAGAACTGGAAATTGTTTATCATAGAAGTAAAGTGAATCCAGAGCCTACAAAGGACTTGTTGGATGTTGATGTCTTGCAGGTTCTGAACTCAAAGGTGGAAGATGATGCCATGTTTGAACAAACCACAACTGATAAAGGTGCAGAAGATTCAGCTTTTGTCGTACAAAAGAAATGTTCTTTGGAGATTCTAAAAAATAAGGGTCAATCACAGAAGGTTTCTAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTAAGTGGTGCTCTGGATGATGTCCCGAACGAGGTGGTTCCGCAACCACCAACACCGAGAAATGAGAGTCCTGCATGGGGTGGAGCAAAGTTCATTAAGGGTTCTGCTTCTATTCGTGAAATCCAGGATGAACAAAGCAAAATCAAGGCAAACCAACCTGTTAGGAGCAAAGAGCATGTGGAAGATCTTTGTAACTCTGGCAGTTTGGGAAAAAAAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCAGTTTCCTCAATTCGCAGTACCCAGGCATCTGATGGAGACATAAGTACCTCTCCTTGGGCTGCTTCAGGAACCCCTCCTCATCTTTCTCATCCATCTTTAAGGGACATCCAAATGCAGCAGGGAAAGAAACAATTGAGTTTTTCCCATAGTCCAAAGACTAGAACAGCTGGATTTACTATTGCTTCTGGTCAAGGTTCACCATCTGAAGTCACTGGGGTGAACCGCTGGTTCAAGCCAGAGATGGAGACACCATCCTCAATTCGATCTATTCAAATTGAGGAAAAGGCTATGAAGGATCTAAAGCGTTTCTACAGCAGCGTTAAGATTGTCAGAAAGCAATCTTAA 3228 0.4222 MELAVSPQVQKQNLQTSGCKFLSAQSHKDLWLVVREGSLTDVELALAQLKKSGGNINLRNAFGLTPLHIATWRNHIPIVRRLLAAGADPNARDGESGWSSLHRALHFGHLAVASILLQHAASTTLEDSKCRIPADLLSGPVFQIFENDQDSVVTEVFSWGSGTNYQLGTGNAHIQKSPCKVDSLNGTLIKLISAAKFHSVAVTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRAVTGLGHRRVKAIAAAKHHTVIATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVTSLRAKVIAVSAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKTLTRVSAAKYHTVVLGSDGEVYTWGHRLVTPTCVIINRNLKKNGSNPLKFHRMERLHVVSIAAGMVHSMALTDDGALFYWISSDPDLRCQQLYAMCGRNMVSISAGKYWIAAATATGDVYVWDGKSKDKSPVVTRLHGVKRATSVAVGETHLLIVASLYHPFYPLDVTGNSQKHKLNNRDDMKELNEDILFEDMESNKYDTFGQRSVPSLKSLCEKVAAEYLVEPRNAIQLLDIADSLGADGLKKYCEEIVMRNLDYVFTISSHAVSSTSPDVLANLERSLDQKSSESWSHHQLPCPTATFPVIINSEEDDSDLELQKTCGKSMKMSALKLEKDQRVDSFLQPKDDPNQGVSKVVRALRKKLQQIEMLEAKQSNGYLLDDQQIAKLKSKSAVEKSLSELGVPVQTFQDKELPSVLLERKSNKKGKISRKQRRKSSKPSVEQTELEIVYHRSKVNPEPTKDLLDVDVLQVLNSKVEDDAMFEQTTTDKGAEDSAFVVQKKCSLEILKNKGQSQKVSKKKSKKGGLSMFLSGALDDVPNEVVPQPPTPRNESPAWGGAKFIKGSASIREIQDEQSKIKANQPVRSKEHVEDLCNSGSLGKKKLSSFLPSSPIPVSSIRSTQASDGDISTSPWAASGTPPHLSHPSLRDIQMQQGKKQLSFSHSPKTRTAGFTIASGQGSPSEVTGVNRWFKPEMETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS. 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02179 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Seca10g02179 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Seca10g02179 1075 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Seca10g02179 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 206 259 IPR000408 -
Seca10g02179 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Seca10g02179 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Seca10g02179 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Seca10g02179 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Seca10g02179 1075 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Seca10g02179 1075 SUPERFAMILY RCC1/BLIP-II 155 475 IPR009091 -
Seca10g02179 1075 PANTHER BTK-BINDING PROTEIN-RELATED 20 1066 - -
Seca10g02179 1075 MobiDBLite consensus disorder prediction 770 791 - -
Seca10g02179 1075 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Seca10g02179 1075 Pfam Ankyrin repeats (3 copies) 43 126 IPR002110 GO:0005515
Seca10g02179 1075 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Seca10g02179 1075 Gene3D - 4 140 IPR036770 -
Seca10g02179 1075 MobiDBLite consensus disorder prediction 957 991 - -
Seca10g02179 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 263 IPR000408 -
Seca10g02179 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Seca10g02179 1075 MobiDBLite consensus disorder prediction 957 984 - -
Seca10g02179 1075 SUPERFAMILY Ankyrin repeat 35 136 IPR036770 -
Seca10g02179 1075 Gene3D - 145 387 IPR009091 -
Seca10g02179 1075 Gene3D - 388 508 IPR009091 -
Seca10g02179 1075 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Seca10g02179 1075 MobiDBLite consensus disorder prediction 885 905 - -
Seca10g02179 1075 SMART ANK_2a 96 125 IPR002110 GO:0005515
Seca10g02179 1075 SMART ANK_2a 62 91 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02179 Seca-Chr10 24972888 24983827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02179 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 36.275 4.61e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02179 K24810 - gmx:100800604 1618.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02179 10 24972888 24983827 Seca10g02179 10 24972888 24983827 ECH