Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02173 ATGGCCAAAACTCCCATCCTTGTGGTGGGGCTTTTGCTCTTGCACTGTTGGGTAGCCATGACACAGGCAGAGTATTTGAAATACAAAGATCCAAAACAGCCATTGAATGTTCGAATCAGGGATCTCATGAACAGGATGACTTTAGAAGAGAAAATTGGCCAGATGGTGCAGATTGATCGCTCTGTTGCTTCTGCTGATGTCATTAAGAAGTATTATATTGTTGAGTATATTGAACTGTTTTTTTTAATAGGGAGCGTGCTTAGTGGGGGTGGCAGTGTTCCAAAGCCACAGGCTTCTGCAGAAGACTGGGTGGACATGGTGAATGATTTTCAAAAGGGTGCTTTATCAACTAAGTTGGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGCCATAACAATGTCTATAAGGCAACAATTTTTCCTCACAATGTTGGCCTAGGAGCTACCCGGGATCCTCTACTAGTGAAGAAGATTGGAGAAGCTACCGCTCTTGAAGTTAGAGCAACTGGAATTCCATATGTCTTTGCACCTTGCATCGCGGTCTGCAGAGATCCTAGATGGGGCCGATGTTATGAAAGTTATAGTGAAGATCATAAAGTTGTGCAAGCTATGACTGAGATCATCCCAGGACTGCAAGGTGACATCCCTGCAAACTCACGAAAGGGTGTTCCATTTGTTGCTGGAAAAAAGAAAGTTGCAGCTTGTGCTAAGCACTATGTTGGTGATGGTGGAACCACAAGAGGAATCAATGAGAACAACACAGTGATAAGCAGGCACGGATTGCTTAGCATTCACATGCCAGGCTACTATAACTCAATCATTAAGGGTGTATCAACCATCATGATCTCTTACTCAAGCTGGAATGGAGAAAAGATGCATGCTAATCATGAACTAGTCACTGGCTTTCTCAAGAACACACTCCGTTTCAGGGGTTTTGTCATATCAGATTGGCAGGGTATTGACAGGATTACTTCCCCTCCTCATGCTAACTACACATATTCCATCATAGCTGGAGTCACTGCCGGTATTGACATGATAATGGTTCCGTTAAACTACACAGAATTCATAGATGGCCTAACCTTACTAGTGAAAAATAATGTCATACCCATGAGTCGAATTGATGATGCGGTGAAGAGAATTTTGAGGGTCAAGTTTGTTATGGGTCTTTTTGAGAATCCATTGGCTGATTACAGCCTAGTCAAGGAGCTTGGTAGCCAGGAGCATAGAGAATTGGCTAGGGAAGCTGTAAGGAAATCATTGGTCCTATTAAAGAATGGTGAAAATGCTGATAAGCCATTGCTCCCTCTTCCTAAAAAGGCCTCAAAGATACTAGTTGCTGGAACCCATGCTGATAATCTAGGCTATCAATGTGGTGGATGGACCATTCAATGGCAAGGACTTAGTGGCAACAACCTTACTAGTACCACAATTCTCAGTGCTATAAAAAACACTGTTGACAAAGACACTGAAGTAGTCTACAAGGAGAACCCTGATTTAGACTATGTAAACTCTAATGATTTTTCATATGCCATTGTGGTAGTTGGAGAGACTCCATATGCTGAAACAAATGGTGATAGCATGAATTTGACAATCACTGCTCCTGGTCCAGACATCATAACTAATGTTTGTGGAGGAGTCAAATGTGTTGTTGTGGTCATCAGTGGTCGCCCTGTGGTTATGCAGCCATTCCTTGACTCAATTGATGCCATTGTTGCTGCTTGGCTTCCAGGTACTGAGGGTCAAGGTGTAGCTGATGTCTTATTTGGTGACTATGGATTCAGTGGCAAGCTTCCAAGGACATGGATGAAGACTGTTGATCAATTGCCAATGAATGTTGGAGATCCTCATTATGACCCCCTATTCCCATTTGGATTTGGCCTTACAACCCAACCCCACAAGGCCACATAA 1914 0.4284 MAKTPILVVGLLLLHCWVAMTQAEYLKYKDPKQPLNVRIRDLMNRMTLEEKIGQMVQIDRSVASADVIKKYYIVEYIELFFLIGSVLSGGGSVPKPQASAEDWVDMVNDFQKGALSTKLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDPLLVKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKVVQAMTEIIPGLQGDIPANSRKGVPFVAGKKKVAACAKHYVGDGGTTRGINENNTVISRHGLLSIHMPGYYNSIIKGVSTIMISYSSWNGEKMHANHELVTGFLKNTLRFRGFVISDWQGIDRITSPPHANYTYSIIAGVTAGIDMIMVPLNYTEFIDGLTLLVKNNVIPMSRIDDAVKRILRVKFVMGLFENPLADYSLVKELGSQEHRELAREAVRKSLVLLKNGENADKPLLPLPKKASKILVAGTHADNLGYQCGGWTIQWQGLSGNNLTSTTILSAIKNTVDKDTEVVYKENPDLDYVNSNDFSYAIVVVGETPYAETNGDSMNLTITAPGPDIITNVCGGVKCVVVVISGRPVVMQPFLDSIDAIVAAWLPGTEGQGVADVLFGDYGFSGKLPRTWMKTVDQLPMNVGDPHYDPLFPFGFGLTTQPHKAT. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02173 637 Gene3D - 407 632 IPR036881 GO:0004553|GO:0005975
Seca10g02173 637 Pfam Glycosyl hydrolase family 3 N terminal domain 47 385 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 422 630 IPR036881 GO:0004553|GO:0005975
Seca10g02173 637 SUPERFAMILY (Trans)glycosidases 26 421 IPR017853 -
Seca10g02173 637 Gene3D - 21 406 IPR036962 GO:0004553|GO:0005975
Seca10g02173 637 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 21 406 - -
Seca10g02173 637 PRINTS Glycosyl hydrolase family 3 signature 118 134 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 PRINTS Glycosyl hydrolase family 3 signature 188 204 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 PRINTS Glycosyl hydrolase family 3 signature 142 161 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 PRINTS Glycosyl hydrolase family 3 signature 234 250 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 PRINTS Glycosyl hydrolase family 3 signature 304 322 IPR001764 GO:0004553|GO:0005975
Seca10g02173 637 FunFam Glycosyl hydrolase family protein 407 632 - -
Seca10g02173 637 Pfam Glycosyl hydrolase family 3 C-terminal domain 422 630 IPR002772 GO:0004553|GO:0005975
Seca10g02173 637 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 23 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02173 Seca-Chr10 24868485 24872348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02173 8 635 Glycoside Hydrolase AT5G20950 74.563 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02173 K05349 - gmx:100819414 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02173 10 24868485 24872348 Seca10g02173 10 24868485 24872348 ECH