Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02160 ATGAATGCACTAGCAGCCACCAATAGGAACTTTAAGTTAGCCTCTAGGCTTCTTGGATTGGATTCCAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGTGTTCAATGAAAGTGCAGGTTGAGTGTACCATCCCTAAAGATGATGGCACCTTGGCGACATTTGTTGGATTCAGGGTTCAACATGATAATTCCAGAGGCCCTATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTAGCACAACTCATGACATGGAAGACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGACTTAAGTCTGTCAGAGTTAGAAAGACTTACTAGAGTTTTTACCCAAAAAATTCATGATCTCATTGGAATTCAGACAGATGTACCTGCACCTGATATGGGAACAGGACCACAGACTATGGCATGGATACTAGATGAGTATTCCAAATTTCATGGCTACTCACCTGCAGTAGTGACTGGGAAACCTCTAGATCTTGGTGGATCTCTAGGCAGAGATGCAGCTACAGGAAGAGGAGTCCTCTTTGCAACAGAGGCTTTACTTAATGAGCATGGGAAGAGTGTATCCGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTGGGGTCTTGGGCTGCCCAATTAATCAGTGAAAAGGGAGGAAAAATTGTTGCAGTGAGTGACATAACAGGAGCTGTAAAGAATAGCAATGGTCTTGACATTCCAAGCCTACTCAAGTATTCCAGAGAGCACAGGGGAGTAAAGGGATTCCATGGTGGTGATCCAATTGACCCCAAGTCAATACTGGTTGAAGATTGTGATGTTCTTGTCCCAGCAGCTCTTGGGGGAGTTATCAATAGGGAAAATGCAAATGAGATTAAAGCCAAATTTATTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTAAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCAAATTCAGGAGGAGTCACAGTTAGCTACTTTGAGTGGGTTCAGAATATACAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAATGAGCTGAAGACATACATGACTAAAGGTTTCAAAGATGTGAAGGAGATGTGCAAAACCCATGATTGTGATCTTCGTATGGGAGCTTTCACCCTTGCAGTTAACCGTGTCGCAAGGGCCACTGTCCTTAGGGGTTGGGAAGCTTGA 1254 0.4418 MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKCSMKVQVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPADLSLSELERLTRVFTQKIHDLIGIQTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPLDLGGSLGRDAATGRGVLFATEALLNEHGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKIVAVSDITGAVKNSNGLDIPSLLKYSREHRGVKGFHGGDPIDPKSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHDCDLRMGAFTLAVNRVARATVLRGWEA. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02160 417 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 102 115 IPR033524 -
Seca10g02160 417 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 342 353 IPR006095 GO:0006520|GO:0016491
Seca10g02160 417 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 215 235 IPR006095 GO:0006520|GO:0016491
Seca10g02160 417 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 173 195 IPR006095 GO:0006520|GO:0016491
Seca10g02160 417 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 94 108 IPR006095 GO:0006520|GO:0016491
Seca10g02160 417 CDD NAD_bind_1_Glu_DH 182 408 IPR033922 GO:0016639
Seca10g02160 417 FunFam Glutamate dehydrogenase 39 181 - -
Seca10g02160 417 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 182 414 IPR006096 GO:0006520|GO:0016491
Seca10g02160 417 FunFam Glutamate dehydrogenase 182 416 - -
Seca10g02160 417 Gene3D - 182 416 - -
Seca10g02160 417 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 41 165 IPR006097 GO:0006520|GO:0016491
Seca10g02160 417 PANTHER GLUTAMATE DEHYDROGENASE 2 415 - -
Seca10g02160 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 182 415 IPR036291 -
Seca10g02160 417 PIRSF Glu_DH 1 417 IPR014362 GO:0016639
Seca10g02160 417 SMART ELFV_dehydrog_3 184 414 IPR006096 GO:0006520|GO:0016491
Seca10g02160 417 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 9 184 IPR046346 -
Seca10g02160 417 Gene3D Leucine Dehydrogenase, chain A, domain 1 40 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02160 Seca-Chr10 24691751 24695219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02160 1 302 EF-hand Containing Proteins AT5G07440 76.490 1.36e-174 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02160 K00261 - gmx:100777869 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02160 10 24691751 24695219 Seca10g02160 10 24691751 24695219 ECH