Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02150 ATGGCTACAACTACAACACAACAAACCAGTGGCACTTCTACTTCCACTCACACTGAGTCTATTCCTCTTCATGACCGAGTCGCAATCGTCACTGGCTCGTCCCGTGGAATCGGTCGAGAGGTCGCTCTCCACCTGAGTTCACTCGGTGCACGAGTCGTCGTCAATTACTCCTCCTCCGACTCCGCCCCAGCCGACTCAGTCGTCGCCGAAATCAACGCCGCCGCGAACCGCAACACTCCGCGAGCCATCGCGGTCCGCGCTGACATTTCCGATCCGGCTCAGGTGCAGTCCCTCTTCGACTCGGCTGAGCGCGCCTTTGACTCGCCGGTTCACATCCTGGTCAACTCGGCAGGAACCCTAGACAGCACTTACCCCTCCGTCGCCAACACCTCTGTTGAGAGCTTCGACCGCGTGTTCTCCGTGAACGCGAGGGGCGCGTTCCTGTGCGCGCGTGAGGCGGCGAACCGCCTGAAGCGCGGCGGCGGGGGACGGATCATACTGTTCTCGTCGTCGCAGGTGGCGGCTCTGAGGCCGGGGTTCGCGGCATACACGGCGGCGAAGGCGGCGGTGGAGGCAATGACGAAGATTCTGGCGAAGGAGCTGAAAGGGACCGGGATCACGGCGAATTGCGTGGCGCCGGGGCCGATTGCGACGGAGCTGTTCTTCGGAGGTAGAACGGAGGAGCAGGTGAAGAAGATTATCGATGAGTCGCCATTGGGGAGGCTCGGTGAGACCAAGGATGTTGCACCTTTGGTGGGGTTTTTGGCTTCCGATGCCGGTGAATGGGTCAACGCTCAGATTATTCGTGTTAACGGCGGTTATGTTTAG 828 0.6051 MATTTTQQTSGTSTSTHTESIPLHDRVAIVTGSSRGIGREVALHLSSLGARVVVNYSSSDSAPADSVVAEINAAANRNTPRAIAVRADISDPAQVQSLFDSAERAFDSPVHILVNSAGTLDSTYPSVANTSVESFDRVFSVNARGAFLCAREAANRLKRGGGGRIILFSSSQVAALRPGFAAYTAAKAAVEAMTKILAKELKGTGITANCVAPGPIATELFFGGRTEEQVKKIIDESPLGRLGETKDVAPLVGFLASDAGEWVNAQIIRVNGGYV. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02150 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 170 198 IPR020904 GO:0016491
Seca10g02150 275 Pfam Enoyl-(Acyl carrier protein) reductase 32 274 - -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 238 258 IPR002347 -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 27 44 IPR002347 -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Seca10g02150 275 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Seca10g02150 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 274 IPR036291 -
Seca10g02150 275 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 13 273 - -
Seca10g02150 275 FunFam Short-chain dehydrogenase reductase 13 275 - -
Seca10g02150 275 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g02150 275 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 26 214 - -
Seca10g02150 275 Gene3D - 1 274 - -
Seca10g02150 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Seca10g02150 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Seca10g02150 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02150 Seca-Chr10 24614035 24614862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02150 15 273 Acyl Lipid Metabolism Gene Families AT1G24360 32.707 3.50e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02150 K00059 - gmx:100809416 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02150 10 24614035 24614862 Seca10g02150 10 24614035 24614862 ECH