Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01680 ATGTTGGACGGTCGTTCCTGTGTTGTTCCGAGGCTGTTTTCAAGCTCCTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTACCTGCTGGACTTGGACATCAAAAATGGAAAGCGCCCTATGGAAATTGGTGCTGCTGAGGATGAGCCTCAGCCAAGGAAGTGTACCAAGATATTTGATTCTTGCCACATAGTTGAAACGGTTCAAATTTCGTTTCAACAGCAATCTTGTGAGGCTAAGGATTCTGTTGTTCCCCAAATGGATGAGGAGATCATTAAGCCATTGAGTATTTGTCAAGAAGTTGAAGAAGAAGCTGGAGCTTGGACTAACCAGGTATTGGCTGAACAAGAAAAGCAGATTGATGGTGATTCAATGGAACTTGGTGACCATCAATCTGATAAACAGCAGCAGGTTCAGCATGGGGATTCATCAGATTCTGGTGTTGAGCCTTCTGATGAACAAAATCTGCAACATGCTGAGAATTTATTGAGTTCAAGTGGCTTGCAATCTGATGAGCAACAACAGCACCATGCTGGGGATTCATCAGATTCTGGTTCACTTTTGCCACGCATGAACCGAGACAGCTCAATTGCTTGTCTCAGCCGCTGTTCAAGGTCTGACTATGGTTCCCTTGCCTCACTGAATAGGAGCTTCCGTAACATAATCAGAAGTGGTGAACTCTACACATGGAGGAGACTAAATGGCATCATGGAACACTGGATTTATTTTTCCTGTGCCCTCCTTGAATGGGAGGCCTATGATCCAATTCGCGAAAGGTGGATGCACTTACCAAGGATGGCTTCTAATGAATGTTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGAACTGAGCTTCTTGTATTTGGGAGGGAGATGAGATCCCATGTCATTTACAGATACAGTCTTTTGACAAACTCATGGTCATCTGGAATGAGAATGAATGCTCCAAGGTGTTTGTTTGGCTCTGCTAGCCTTGGAGAGATTGCAATATTAGCTGGTGGCTGTGATTCAGAGGGACATATCCTTGACTCTGCTGAATTGTATAATTCTGAGAATCAAACATGGGAAACACTCCCAAGAATGAAGAAACCAAGGAAAATGTGCTCTGGGGTATTTATGGATGGAAAATTTTATGTTATAGGTGGAATTGGGGGGAGTGATTCCAAGCTTCTTACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACAGAAATTCCTAACATGTCACCTGGTCGTAGTAGTAGGGGGTCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTTGTTGCTGTTGTAAATAATGAATTGTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAGTATGACAAGGACAGAAAATTGTGGCTTACCATTGGGAGACTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGTCTTGCATTCAGGGCCTGTGGAAATAGGCTTATTGTCATTGGTGGACCTAGGACTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGAGCCTAGTGAGGGACCTCCACAATGGCATCTACTTGCTAGAAAACGTTCTGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1605 0.4405 MLDGRSCVVPRLFSSSCQAENDWSYMKYLLDLDIKNGKRPMEIGAAEDEPQPRKCTKIFDSCHIVETVQISFQQQSCEAKDSVVPQMDEEIIKPLSICQEVEEEAGAWTNQVLAEQEKQIDGDSMELGDHQSDKQQQVQHGDSSDSGVEPSDEQNLQHAENLLSSSGLQSDEQQQHHAGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYTWRRLNGIMEHWIYFSCALLEWEAYDPIRERWMHLPRMASNECFMCSDKESLAVGTELLVFGREMRSHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSENQTWETLPRMKKPRKMCSGVFMDGKFYVIGGIGGSDSKLLTCGEEYNLQTRTWTEIPNMSPGRSSRGSEMPATAEAPPLVAVVNNELYAADYADMEVKKYDKDRKLWLTIGRLPERAASMNGWGLAFRACGNRLIVIGGPRTHGEGFIELNSWEPSEGPPQWHLLARKRSGNFVYNCAVMGC. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01680 534 SMART kelc_smart 377 425 IPR006652 GO:0005515
Seca10g01680 534 SMART kelc_smart 285 328 IPR006652 GO:0005515
Seca10g01680 534 SMART kelc_smart 329 376 IPR006652 GO:0005515
Seca10g01680 534 MobiDBLite consensus disorder prediction 124 188 - -
Seca10g01680 534 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 178 534 - -
Seca10g01680 534 MobiDBLite consensus disorder prediction 137 188 - -
Seca10g01680 534 Gene3D - 243 522 IPR015915 GO:0005515
Seca10g01680 534 FunFam F-box/kelch-repeat protein SKIP11 233 519 - -
Seca10g01680 534 SUPERFAMILY Kelch motif 247 530 IPR015915 GO:0005515
Seca10g01680 534 Pfam Kelch motif 317 362 IPR006652 GO:0005515
Seca10g01680 534 Pfam Kelch motif 365 412 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01680 Seca-Chr10 18478836 18482015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01680 194 410 EF-hand Containing Proteins AT4G39560 25.806 2.53e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01680 - - gmx:100818865 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01680 10 18478836 18482015 Seca10g01680 10 18478836 18482015 ECH