Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01651 ATGCTCCTCAAGTCAAAAGGAGGTCAAGATGACAGCAGTGAATCCAAAGATCAAAAACAAGAAAATAATCAACTAGAAGGTTTCTATATAGAAATGCCTATTACAAAGAAGGTTTCAATCAATAACTCTATCAATGTCTCCATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTTTTATATATTGAAACGGATCTACCTGGAGATATTGTCCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCACCAGAAACCAAAGCATTTAAAGACAAAGCTTTGAGAACTAGATTACAGCCAGAAGGAAGTGGAAAAGGATCTTCAGTACTAATCACTTTAGGAGAAGAATTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAATACTTGGTTCAAGTACATGGGGAATGACTTTTATATCCCCCTTTCAAGTTCTAGTAGCCATAGGGAGGATCATTCAAAAGGTGTGCAGAGGGAAGTGACTGAAGAGGCAAGTCAAGAGACTTCTTTCTTTGCATTTACTGATGGAATAGTCAATGAAATAAGGAATTTGGTGACAGACACTTCCTCTGAGAAGAATCAAAGGACAAAATCCAAAAAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTAGCTGCTGAAGCCTATAATATCTTCAGAAGTGCCATTCCAACTTTCTCAGAGGCAACTGTTATGGAACCTGAGACAACTATTGTGGAGCCTGAGGCTACAATTGGGGAACCTGAAGCTGCTGTGGAAACAGAGACATTGACCCTGGATCCAAAAGAATACTTAGGGACAGGCATAGGGTCAGAGACATTGACTCTGGATCCAAATATATGCTCAGGGACAGGCACAGGGTATGAAATATTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATGGACCTTAAACAGAAAGCTTCAGAACTAGGATCACTTGGTTGCACTGTGGTTTGGTTACCCCCACCTACAGAGTCTGTTTCACCTGAAGGATACATGCCAAAGGATTTATATAATTTAAATTCCAGATATGGAAACATTGATGAGCTGAAAGATTTGGTGATACAATTTCATGAAGTGGGAATCAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTATCAAAATCAGAATGGTATTTGGAACATATTTGGAGGTCGTCTTGACTGGGATGATCGTGCAATTGTTGGTGATGATCCACATTTTCAGGGTAGGGGCAACAAGAGTAGTGGAGATACTTTTCATGCTGCTCCAAACATTGATCATTCACAGGAATTTGTGAGAAGGGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAATTGGGTATGATGGATGGAGACTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAAGACTACTTGGATGCAAGTGAACCTTACTTTGCTGTGGGAGAGTACTGGGATTCCCTCAGTTATACATATGGTGAAATGGATTATAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAATGCAACAAATGGTACCGCTGGTGCATTTGATGTTACAACAAAAGGGGTTCTTCACTCTGCATTGGAAAGATGTGAATATTGGCGATTGTCAGATCAGAAGGGAAAACCCCCTGGCGTTGTTGGGTGGTGGCCATCTCGTGCCGTTACCTTCATAGAAAATCATGACACTGGTTCCACCCAGGGTCATTGGAGATTTCCAAGTGGAAAGGAAATGCAAGGATATGCTTACATTCTTACTCACCCAGGAACCCCATCAGTGTTCTTTGACCATATTTTCTCTCACTATAAAAATGAAATAGCAACTCTTATATCTCTCAGGAAGAGAAACAAGATCCACTGCAGGAGCACAGTTGAAATTAGCAAGGCAGAAAGGGATGTTTATGCAGCCATCATTGATGATAAAATTGCTATGAAAATCGGACCTGGACATTTTGAACCACCTAGTGACTCCTACAAATGGTCCTTAGCTGTTGAGGGAAGAGACTATAAGGTTTGGGAGGCATCATAA 2079 0.4064 MLLKSKGGQDDSSESKDQKQENNQLEGFYIEMPITKKVSINNSINVSIKKCFESEAVKNLLYIETDLPGDIVLHWGVCRDDSRRWEVPPAPHPPETKAFKDKALRTRLQPEGSGKGSSVLITLGEEFSGFLFVLKQNENTWFKYMGNDFYIPLSSSSSHREDHSKGVQREVTEEASQETSFFAFTDGIVNEIRNLVTDTSSEKNQRTKSKKAQESILQEIERLAAEAYNIFRSAIPTFSEATVMEPETTIVEPEATIGEPEAAVETETLTLDPKEYLGTGIGSETLTLDPNICSGTGTGYEILCQGFNWESHKSGRWYMDLKQKASELGSLGCTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDLVIQFHEVGIKVLGDAVLNHRCAHYQNQNGIWNIFGGRLDWDDRAIVGDDPHFQGRGNKSSGDTFHAAPNIDHSQEFVRRDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGVLHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFFDHIFSHYKNEIATLISLRKRNKIHCRSTVEISKAERDVYAAIIDDKIAMKIGPGHFEPPSDSYKWSLAVEGRDYKVWEAS. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01651 692 Gene3D Glycosidases 301 634 - -
Seca10g01651 692 SMART alpha-amyl_c2 631 691 IPR012850 GO:0004556|GO:0005509|GO:0005975
Seca10g01651 692 PANTHER ALPHA-AMYLASE 267 691 - -
Seca10g01651 692 CDD AmyAc_arch_bac_plant_AmyA 302 641 - -
Seca10g01651 692 SMART aamy 301 630 IPR006047 GO:0005975
Seca10g01651 692 SUPERFAMILY Glycosyl hydrolase domain 635 690 - -
Seca10g01651 692 MobiDBLite consensus disorder prediction 1 24 - -
Seca10g01651 692 Pfam Alpha amylase, catalytic domain 328 584 IPR006047 GO:0005975
Seca10g01651 692 Gene3D - 635 691 IPR013780 -
Seca10g01651 692 SUPERFAMILY (Trans)glycosidases 300 617 IPR017853 -
Seca10g01651 692 Pfam Alpha-amylase C-terminal beta-sheet domain 632 690 IPR012850 GO:0004556|GO:0005509|GO:0005975
Seca10g01651 692 PRINTS Alpha-amylase signature 465 476 IPR006046 GO:0004556|GO:0005975|GO:0043169
Seca10g01651 692 PRINTS Alpha-amylase signature 569 581 IPR006046 GO:0004556|GO:0005975|GO:0043169
Seca10g01651 692 PRINTS Alpha-amylase signature 379 390 IPR006046 GO:0004556|GO:0005975|GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01651 Seca-Chr10 18128904 18137406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01651 9 692 Glycoside Hydrolase AT1G69830 67.591 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01651 K01176 - gmx:100810333 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01651 10 18128904 18137406 Seca10g01651 10 18128904 18137406 ECH