Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01601 ATGGATTATCAGCTGCTACAGATATTTGCAGTGCTGGCACTAGTAGCATTTGGAGGAGACATAAGAAGAACTGCAGAAGCTTGCAGTTCAGATGACTTGGAAGGTTTGATAGGCTTCAAGAATGGGATTCAGATGGACACATCTGGTCGCCTAGCAAAGTGGGTTGGTAAGAGCTGTTGTGAATGGAAAGGTATTGTCTGTGAAAATGCAACCAAAAGAGTGACACAGATCCATCTCCCAGGGTTAATTGATAATGATTTGTTACAAACCCAGATGATGGGTCAGCTTTCTCCTTCCATAACACTCCTCACCTCTCTTGAAATCCTCGATCTTGGTGGTTTAGTAGGTCTCAGTGGAACAATTCCACAAACAATTGGTTTGCAACTGCCAAAGCTCCAAAAACTCTACCTTTATGGGAACAATTTAACTGGGCCAATACCAGAAAGCATTGGTGAGTTGTCAAACCTCCAGGAACTGGCGCTGCATGAAAATAAGTTATCTGGGTCGATCCCTTCTAGCCTTGGAAGCTTAAAAAACCTCGAAAGTTTGCTGCTTTATTCAAATCAAATTTCAGGTACATTGCCCCTCTCACTTGGGAATTTGACAAATTTGGTACAGTTGGATGTTCATGACAATGCTCTTACGGGTCATATACCCAATAGCATTGGTCAGATGCTGGCTCTGGAACAGCTTGATCTTTCAAGCAATTTGCTAAGTGGGAACATACCTTCTTCACTAACCAATTTAACTGCCATTTCAGTTTTGTATATGGACACCAACCATCTTGAGGGAATCATCCCATTTCCCTCAAGATCAGGTGAAATGCCTTGTCTGGGCTTCTTAAGACTTCATGATAACCATCTAAGTGGAAATATACCTCCTAGTCTTGGCTACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTAGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCTTTCTTTAGCAGAGCTTTACCTCAGTGGTAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCAACTTTCAGAGCTCATAATGTTGAATATTTCCAATAATTTGATTGAAGGGCCTTTGCCTCAAGAAATGTCTTCCCTTAAAAATATCCAAACACTTGATCTTTCTTTCAACCCTTTGAACCTTTCTGCCTTCCCAGAATGGTTTATAAATCTGTCATCACTTACCCGCATTCACTTGGCAGGCTGCGGTATCCAGGGCCAAATTCCAAACTTTTTGCAAACAACTCACAGTCCAATACAGGAACTGGACTTATCAGTTAACCTTCTTAGTGGAACCATACCATCATGGATAGGATCCCTCAGTCAACTCTACTTGTTAAATCTCTCAAGTAATTCACTTGATTCACACATCCCTGATTCTGTTAAAGACTTGCATGATCTAGGTGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATAACTGGAGTATTTAATATTGAACAAGATACTTCTGAGGGATCACTAACATATATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTAGAGCAGATTGGCTTAGGAGGGCAGCTTAATATTCAGTTTCTGAATTTGTCTCATAACCTTTTGAAGGGTACATTGTCAAGTTCCCTTGGGAGACTGAACTCTATCCACAGTTTGGATTTGAGCTTCAATGAGTTAGCCTCCAACTTGCCAGAGGTGCTGGCAAACTTGACATTGTTGGAGAGACTGAAGCTGCAAAAGAATCATTTCAGAGGTAACATACCCAATGGATTTCTCAAGTTGAGAAAGTTGAAGGAATTGGATTTATCAGACAATGTACTAGAAGGGGAGATTCCAAAGGGTAAACCACTAATTGACTTCCCTGGGAGTTCTTATTCTGGAAATAAAGGTTTGTGTGGGAAGCCTCTCACTCCCTGTAAATTTTGA 1929 0.4075 MDYQLLQIFAVLALVAFGGDIRRTAEACSSDDLEGLIGFKNGIQMDTSGRLAKWVGKSCCEWKGIVCENATKRVTQIHLPGLIDNDLLQTQMMGQLSPSITLLTSLEILDLGGLVGLSGTIPQTIGLQLPKLQKLYLYGNNLTGPIPESIGELSNLQELALHENKLSGSIPSSLGSLKNLESLLLYSNQISGTLPLSLGNLTNLVQLDVHDNALTGHIPNSIGQMLALEQLDLSSNLLSGNIPSSLTNLTAISVLYMDTNHLEGIIPFPSRSGEMPCLGFLRLHDNHLSGNIPPSLGYLVSLQRVSLSNNKLEGALPSSLGNLLSLAELYLSGNSLSGQIPKSIGQLSELIMLNISNNLIEGPLPQEMSSLKNIQTLDLSFNPLNLSAFPEWFINLSSLTRIHLAGCGIQGQIPNFLQTTHSPIQELDLSVNLLSGTIPSWIGSLSQLYLLNLSSNSLDSHIPDSVKDLHDLGVLDLHSNKLTGSITGVFNIEQDTSEGSLTYIDLSDNNFSSGVEQIGLGGQLNIQFLNLSHNLLKGTLSSSLGRLNSIHSLDLSFNELASNLPEVLANLTLLERLKLQKNHFRGNIPNGFLKLRKLKELDLSDNVLEGEIPKGKPLIDFPGSSYSGNKGLCGKPLTPCKF. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01601 642 Gene3D Ribonuclease Inhibitor 85 342 IPR032675 -
Seca10g01601 642 FunFam Leucine-rich repeat receptor protein kinase EMS1 269 350 - -
Seca10g01601 642 SUPERFAMILY L domain-like 269 628 - -
Seca10g01601 642 Pfam Leucine rich repeat 326 384 IPR001611 GO:0005515
Seca10g01601 642 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Seca10g01601 642 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Seca10g01601 642 Gene3D Ribonuclease Inhibitor 25 84 IPR032675 -
Seca10g01601 642 Gene3D Ribonuclease Inhibitor 350 642 IPR032675 -
Seca10g01601 642 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 27 417 - -
Seca10g01601 642 SUPERFAMILY L domain-like 57 384 - -
Seca10g01601 642 SMART LRR_typ_2 299 322 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 323 347 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 177 200 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 469 492 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 129 153 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 201 225 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 547 570 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 371 395 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 445 468 IPR003591 -
Seca10g01601 642 SMART LRR_typ_2 595 617 IPR003591 -
Seca10g01601 642 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 268 - -
Seca10g01601 642 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 642 - -
Seca10g01601 642 SMART LRR_sd22_2 547 566 - -
Seca10g01601 642 SMART LRR_sd22_2 595 610 - -
Seca10g01601 642 SMART LRR_sd22_2 469 494 - -
Seca10g01601 642 SMART LRR_sd22_2 323 349 - -
Seca10g01601 642 SMART LRR_sd22_2 129 155 - -
Seca10g01601 642 SMART LRR_sd22_2 371 388 - -
Seca10g01601 642 SMART LRR_sd22_2 225 251 - -
Seca10g01601 642 SMART LRR_sd22_2 177 203 - -
Seca10g01601 642 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01601 Seca-Chr10 17598741 17601295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01601 2 640 Receptor kinase-like Gene Family AT4G08850 32.460 1.76e-89 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01601 - - gmx:100799647 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01601 10 17598741 17601295 Seca10g01601 10 17598741 17601295 ECH
Seca10g01601 10 17598741 17601295 Seca10g01601 10 17598741 17601295 PCT