Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01582 ATGTCCTCCAGGCGTCATTCGCTCAGTAGCCCGCCCCAACTCGCTGGTCCCGTCTCGACTCAGGAGCTCCGGCAGCGAGTCATCTCCTGCCTCAACAAGCTCTCCGACCGCGACACCCTCGCCAGCGCCGCCGCGGAGCTCGAGTCCATCGCCCGAACCCTAAGCCACGACACCTTCTCCTCTTTTCTCTCCTGCATTCACAACACCGATTCCTCTTCCAAATCGCCGGTTCGCAAACAATGCGTTCACCTTCTGAGCCTTCTCTCACGCTTCCACGGTGACGCTCTCTCTCCATTCATCTCCAAGATGATCGCCACCGTCCTCCGCCGCCTCCGCGACCCCGACTCCGCCGTCCGATCCGCTTGCGTCGACGCCGTCGCCACCATGTCCTCGCAGATCACCCGGCCGCCGTTCTCCTCCGCGTTCTTGAGGCCGCTCATGGATTCTCTGGCGCAGGAGCAGGACGCCAACTCGCAGATCGGCGCCGCGTTGTGCCTCGCGGCGGCGGTAGAGGCGGCGCCGGACCCGGACGTTGAGTCGCTCCGGCGGAGCGTGATGCCGAGGCTGGGGAAGCTCGTGAAGAACGACTCGTGCAAGGCGAAGGCGGCGGTGCTGGTGCTGATCGGAAGCGTTGTAGCCGTCGGCGGCGCGGCGAGCCGAGCTTCGATGAACTGGTTAGTGCCTTGCCTCCTTGAGTTTCTTAGCTGTGACGATTGGACGGTGAGAAAGGCCTCGGCGGAGGCGCTGGGAAAGGTGGCTTTGGTGGAGAAAGATTTGGCATCGCAGCATAAGGTTCTGTGCTTGGATTCGTTACAGAATCGCAGGTTTGATAAAGTCAAAGTAGTTCGGGAGACTATGAATCGTGCGTTGGATATGTGGAAGGAGGTAGGTGATGTATCTGGGGAGGTTCCTGCTCCGGTTAAGTCCGCTTGTGCTTCAGTTGGTAAGGGCACAGATGATAGTAAAGGTCACTGCATTGATAAAAGTCCACCCTATGTTGGCTCTAAATCATCTCAACCAAAGAAAACAGTCCCTGCCAACAGGTCCCCTCCATCTACAGTTTCATTTGCATCCTCCATCAAAAGACAGAGTTCTCTAAAAAGTAATGACAAGGATTCGAGAATGGAGACATTGCATCAGCAGGAACATGAGAAGTTCTCAGATGAGAAACTTGTAACACCTGCATCAAAGTCCCCTCCCTCAAACATGTCTGCGGAAGATGATATTAAAAGGTGTGATTTTGAAGCTTCTAAACCAGCACCATATCAAAATGGGGTAAATTCGAGGGCAGATATAAAGCGTGTTCTCTTTAGCAAGATGTCTGATGAGAAAGGGCGGAGATTTGGTGGTTCAAAATCTCGTGTGGTTCCATGTTATGATGACGACGATCTTGACACAAATGTTACAGTCAATAATGTAAATGAAGTATGTGAGAGCCCACAAGATGTTGAAGATTTTTCTTTGATCCGTGAACAACTTATTCAGATTGAAAACCAACAATCAAATCTGTTAGACCTCCTCCAGAGATTTATTGGAAGCTCCCAAAGTGGGATGAATTCTCTTGAGACACGAGTGCATGGTCTAGAGATGGCCCTGGATGAAATATCATATGATTTAGCAGTATCAAGTGGCAGGATTCCCAATACTGATGCCATAGAAGACACATGTTGCAAGCTACCTGGAACTGACTTTTTGAGTTCTAAATTTTGGAAGAAGACAGAAGGTCGGTATTCAACATCAAGGTTCTCTTTAGGAAGCTCAGCATCAGTAAATGCTGTGCATAATGCAAATGATGGAAATGTAAGCAAAGAAAAATTAATTGCAAATAACAGAAGATTTCAGCATCGCAGGGATGGGGGTGGATTTTGTGTGAACCCATTGGTAGAAGTTCAAAGTGATTTGAAGGGACATTTAGGTCAACATTCATATAAAATGTCTAAAAACATGGTTCAAGATGCCGGGGGACAACAAAGTAACAGTGCCAGCAGATTTGATGGCATTTCTTCAATTAGTGAAGCACTGAGGAACCAGAATATCAGGTCATCCGTGTAG 2052 0.4985 MSSRRHSLSSPPQLAGPVSTQELRQRVISCLNKLSDRDTLASAAAELESIARTLSHDTFSSFLSCIHNTDSSSKSPVRKQCVHLLSLLSRFHGDALSPFISKMIATVLRRLRDPDSAVRSACVDAVATMSSQITRPPFSSAFLRPLMDSLAQEQDANSQIGAALCLAAAVEAAPDPDVESLRRSVMPRLGKLVKNDSCKAKAAVLVLIGSVVAVGGAASRASMNWLVPCLLEFLSCDDWTVRKASAEALGKVALVEKDLASQHKVLCLDSLQNRRFDKVKVVRETMNRALDMWKEVGDVSGEVPAPVKSACASVGKGTDDSKGHCIDKSPPYVGSKSSQPKKTVPANRSPPSTVSFASSIKRQSSLKSNDKDSRMETLHQQEHEKFSDEKLVTPASKSPPSNMSAEDDIKRCDFEASKPAPYQNGVNSRADIKRVLFSKMSDEKGRRFGGSKSRVVPCYDDDDLDTNVTVNNVNEVCESPQDVEDFSLIREQLIQIENQQSNLLDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLAVSSGRIPNTDAIEDTCCKLPGTDFLSSKFWKKTEGRYSTSRFSLGSSASVNAVHNANDGNVSKEKLIANNRRFQHRRDGGGFCVNPLVEVQSDLKGHLGQHSYKMSKNMVQDAGGQQSNSASRFDGISSISEALRNQNIRSSV. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01582 683 Coils Coil 489 509 - -
Seca10g01582 683 MobiDBLite consensus disorder prediction 1 20 - -
Seca10g01582 683 ProSiteProfiles IQ motif profile. 625 652 IPR000048 GO:0005515
Seca10g01582 683 FunFam ARM repeat superfamily protein 23 213 - -
Seca10g01582 683 MobiDBLite consensus disorder prediction 365 391 - -
Seca10g01582 683 Gene3D - 11 379 IPR011989 -
Seca10g01582 683 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 21 665 IPR033337 GO:0005874|GO:0008017
Seca10g01582 683 MobiDBLite consensus disorder prediction 312 406 - -
Seca10g01582 683 SUPERFAMILY ARM repeat 21 290 IPR016024 -
Seca10g01582 683 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Seca10g01582 683 MobiDBLite consensus disorder prediction 332 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01582 Seca-Chr10 17174643 17179436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01582 - - tpra:123906851 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01582 10 17174643 17179436 Seca10g01582 10 17174643 17179436 ECH