Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01580 ATGAACTATGAAAATGATGATAGCTTGTTTGAACGTTCTCTTTCAAAGAATGACATAAATGCAATTCGTCGCTCACAAGTTCCTCAAGTAATTGATACGCTATGGCACCTTCAATCTAGGGATATGTTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGACGCAGCTGTGCAATATCTTGAAGATTGCAAACTCTTAGATGAGTGTGAAACAAGTGAGGTTGAACTAGCCTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTCAGAGAATCAGCTGTGAGAGGACTTTTGCAAGGGGTTGCTGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAATTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACGGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACATCCGTTATTTCATCCCTCAGCAAAAGAAGTGATAGTGGACGAATACAATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAGTGGTCATGTAGTCCTCATCCAAACTCCTAATGAAGGTGCTGAAGAGTGCTGCAAGGTACTGTTTGCTGGCCTCGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCATAGGTCAAATGAATCAGATGACATGAGAACTTCCTCAGGAAGAACTTTGGAAGAAGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAATTACGTTAGTAGCAATGTTATGCTGGCTGCTAAAGAGGAAATTAAGAAAATTGAAAGAGAAATTGAGTTGCTGATGTCAGAAATCACAGATGAAGCCATAGATAGAAAAAGCAGGAAGGCTTTATCACAGCGACAATACAAGGAGATTGCAGAATTACAGGAAGATTTAAGGGCAGAAAAACGTGTGCGGACTGAATTGCGGAAACAGATGGAAGCAAAGAGAATATCTGCCCTGAAACCTTTATTGGAAGAGCCCGAAAATGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAAACATGATTTCTTCTGTTGATTCTTTTGCATTAAATTCAGCAGATGCAGAGCCAAGTGTTACTGATTCTGAATTGAATGAAAATCTTGGACCATCGTATCATGTGGCTCTTGGTTCAGATAATTCTTGGTATCTATTTACTGAAAAGTGGATCAAAACCGTATATGTGACAGGCTTTCCTAACATTCCATTGGTTCAAGGGGATGCTCGACCTCGAGAAATTATGAGTACACTCCTTGATAAGGAGGACATGAAGTGGGATAAGCTTGCTCACTCTGAACACGGTGGTTTATGGTTCATGGAAGGATCTCTAGAGACATGGTCTTGGAGCTTGAACGTTCCTGTTTTGAGCAGCTTCACCGAAAATGATGAGCTGCTACTGAAATCTCAAGCCTACAGAGATGCCATTGAACAATACAAGGATCAAAGAAATAAAGTTGCACGCTTGAAGAAAAAAATATCTCGTACTGAAGGCTATAGAGAATATAGTAAAATCTTAGACACGGTCAAGTTCACCGAGGAGAAAATCAAGCACCTGAAGACTAGATCTAAACGTTTGATTAATCGGATAGAACAAATTGAACCCTCTGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATACATGAAACCAGAGCTTTAGATATTAATACGCATCTCATATTTCCGCTTGGCGAAACTGCAGCTGCAATTCGAGGAGAAAATGAACTATGGCTTGCAATGGTTCTTCGCAATAAGATTTTACTAGAACTAAAACCTGCACAACTTGCTGCAGTGTGTGCAAGTTTGGTGTCTGAGGGTATCAAGCTCAGACCATGGAAAAACAATAGTTATATTTATGAGCCTTCTGCAACTGTACTCAATTTCATAAGGTTATTGGATGAACAAAGAGGCGCCCTATTGGCAATTCAGGAGAAACATGGGGTAACAATATCTTGCTGTTTAGACAGCCAGTTTTGTGGTATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGGGAAATAATGATGGATTGTGCAATGGATGATGGTGATCTGGCTCGCCTCCTTCGACGCACCATTGATCTATTAGCTCAGATTCCAAAATTGCCAGATATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGATGTCATGGACAGGCCTCCAATAAGTGAACTTGTTGGGTAG 2331 0.4136 MNYENDDSLFERSLSKNDINAIRRSQVPQVIDTLWHLQSRDMLPAIWFIFSRKGCDAAVQYLEDCKLLDECETSEVELALKRFRIQYPDAVRESAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRSDSGRIQLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIHRSNESDDMRTSSGRTLEEARKLVEQSFGNYVSSNVMLAAKEEIKKIEREIELLMSEITDEAIDRKSRKALSQRQYKEIAELQEDLRAEKRVRTELRKQMEAKRISALKPLLEEPENGHLPFLCLQYRDSEGVQHSIPAVFLGKVDSLNASKLKNMISSVDSFALNSADAEPSVTDSELNENLGPSYHVALGSDNSWYLFTEKWIKTVYVTGFPNIPLVQGDARPREIMSTLLDKEDMKWDKLAHSEHGGLWFMEGSLETWSWSLNVPVLSSFTENDELLLKSQAYRDAIEQYKDQRNKVARLKKKISRTEGYREYSKILDTVKFTEEKIKHLKTRSKRLINRIEQIEPSGWKEFMQVSNVIHETRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSEGIKLRPWKNNSYIYEPSATVLNFIRLLDEQRGALLAIQEKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPKLPDIDPLLQRNAKAASDVMDRPPISELVG. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01580 776 SMART DSHCT_2 601 775 IPR012961 -
Seca10g01580 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 194 IPR027417 -
Seca10g01580 776 Coils Coil 507 537 - -
Seca10g01580 776 CDD SF2_C_Ski2 23 191 - -
Seca10g01580 776 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 558 768 - -
Seca10g01580 776 SMART helicmild6 93 179 IPR001650 -
Seca10g01580 776 Coils Coil 774 776 - -
Seca10g01580 776 Gene3D - 557 768 - -
Seca10g01580 776 Coils Coil 554 574 - -
Seca10g01580 776 Coils Coil 303 330 - -
Seca10g01580 776 Pfam DSHCT (NUC185) domain 607 771 IPR012961 -
Seca10g01580 776 Gene3D - 3 210 IPR027417 -
Seca10g01580 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 26 225 IPR001650 -
Seca10g01580 776 Coils Coil 268 295 - -
Seca10g01580 776 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 23 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01580 Seca-Chr10 17118478 17125325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01580 K26077 - gmx:100780908 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01580 10 17118478 17125325 Seca10g01580 10 17118478 17125325 ECH