Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01577 ATGAGAACCCATTTTCACTCCTTTCCACTATTATTTTTCAGTATATCTCTTCTTTTGGGCCAATGCAGATCTGACCCTGACCCAATTCAAGACTACTGCATTGCAGATAACAAAAACTCATTTTTCATCAATGGGGTGCCTTGCATTAACCCAAAAGAAGCTACCTCATCCCATTTTGTCACATCTGCTTTATCCAAGCCTGGCAACACCACTAACAAATTTGGCTTCAGTGTTACCCCCACCAACACTGTTAATCTTCCTGGGCTTAACACATTGGGCCTTGTACTAGTCCGGGTTGATATAGCAGCTAATGGGATTGTGCCACCTCACTCACACCCACGGGCCTCAGAAGTTACCACTTGTCTCAAAGGCCTGCTTCTTGTGGGCTTTATTGATACATCTAACCGTGTCTTTACCCAAAACTTACAGCCCGGTGAGTCATTTGTGTTTCCAAGGGGCCTGATACATTTCCTATACAATCGTGACTCTAAGCAACCAGCAATAGCACTGTCTGGTCTTAATAGCCAGAACCCAGGTGCACAAATAGCATCACTTGCAACATTTGCTAGTAAGCCTTCAATTCCTGATGAAATACTTAAGAAGGCTTTTCAAATTAGCGGCAAAGATGTGGAAATCATCCGTAGAAACCTTGAAGGATGA 660 0.4333 MRTHFHSFPLLFFSISLLLGQCRSDPDPIQDYCIADNKNSFFINGVPCINPKEATSSHFVTSALSKPGNTTNKFGFSVTPTNTVNLPGLNTLGLVLVRVDIAANGIVPPHSHPRASEVTTCLKGLLLVGFIDTSNRVFTQNLQPGESFVFPRGLIHFLYNRDSKQPAIALSGLNSQNPGAQIASLATFASKPSIPDEILKKAFQISGKDVEIIRRNLEG. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01577 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 22 207 - -
Seca10g01577 219 Pfam Cupin 64 210 IPR006045 -
Seca10g01577 219 CDD cupin_OxOx 25 217 IPR001929 GO:0030145
Seca10g01577 219 SMART Cupin_1_3 62 211 IPR006045 -
Seca10g01577 219 SUPERFAMILY RmlC-like cupins 25 216 IPR011051 -
Seca10g01577 219 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Seca10g01577 219 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Seca10g01577 219 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Seca10g01577 219 Gene3D Jelly Rolls 24 219 IPR014710 -
Seca10g01577 219 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Seca10g01577 219 FunFam germin-like protein subfamily 2 member 1 24 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01577 Seca-Chr10 17083994 17084653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01577 12 211 Miscellaneous Gene Families AT5G39130 43.902 7.32e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01577 - - lja:Lj2g3v1365980.1 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01577 10 17083994 17084653 Seca10g01577 10 17083994 17084653 ECH