Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01545 ATGAGACTTCTTCAATGTCCCTTGTGTTGCTCAGAGGACCAACAACCACAAGCTCACTCCCATCACCTTCATTCAGAATCATCAACCTCTTCCTCCCTTTCTTCACAGCCAAGTCTACCTTCTGTTCCTTCCCTCACCCCACCCTCTCATCAACAACAACCCCAAACCACCACCCACCACCATCTCCTAACCACAGTCAAAGGCCACTCTTCCCCCATCTTCTCCCTCGCTCTCCATGGCAAGTTCCTCTATAGCAGCTCTTCCAGCAGTGAGATAAGGAGATGCAGCAGAGACCCTTTTGTTCTCCAAAGCTCAAGTAACAACAGTAACACCATGGTGGCAATCAGCAATGGAGCCATCAAGTCCCTGATTGTTTCAGGTGATATGCTATTCAGTGCTCACCAAGACCACAAAATCCGCGTTTGGAAAATCGAAACCAATAATCCAAATCCAAACCTTAGATACAAATGCATAGCCACCCTTCCCACCTTCAATGACCGTTTTTCCAAGATGTTTTCATCCAAAAACTACGTTGAAATTCGGCGGCACAAGAAGTGCACATGGGTGCACCATGTTGACACTGTCTCTGCTCTTGCTCTGTCAAAAGATGGTTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTCAAAATCTGGCGAACCAAAGATTTCAAGTGTTTAGAATCCGTAAGGAATGCACATGAGGATGCAATTAATGCCTTGGTTGTGTCCCCTGATGGGGTTGTTTATACAGGTTCTGCTGATAAGAAGATCAAGATATGGAAGAAGCAAGAAGGTGAGAAAAAGCATTCCCTGGTTGGAACCTTGGAGAAGCATAAATCAGCTGTGAATGCACTAGCTCTTAGCACAGATGGGTCAGTGTTGTATTCAGGTGCATGTGACAGGTCAATTTTAGTATGGGAGAAAAATGATAGCAGAAATATGGTGTTGGTGGGTGCTCTGAGAGGGCACACAAAGGCCATATTGTGTTTGGTGGTGGTGACTGATTTGGTGTTTAGTGGATCAGCTGATAACACTGTTAGGATATGGAAGAGAGGGATTGAGAAGAGCTATACATGCCTGGCTGTGTTACAAGGTCATAGAAAACCTGTGAAGTGCTTGGCTGTGACAGCTGACTCCAACAGTGCCAATAATGGTGTTGCTGATGATAACAATAATAATAATAATTCTTATCTGGTTTACAGTGGTAGTCTAGATTGTGACATTAAAGTTTGGCAAATACAAGTTCCTTTGTTTTGA 1260 0.4421 MRLLQCPLCCSEDQQPQAHSHHLHSESSTSSSLSSQPSLPSVPSLTPPSHQQQPQTTTHHHLLTTVKGHSSPIFSLALHGKFLYSSSSSSEIRRCSRDPFVLQSSSNNSNTMVAISNGAIKSLIVSGDMLFSAHQDHKIRVWKIETNNPNPNLRYKCIATLPTFNDRFSKMFSSKNYVEIRRHKKCTWVHHVDTVSALALSKDGSLLYSASWDRTFKIWRTKDFKCLESVRNAHEDAINALVVSPDGVVYTGSADKKIKIWKKQEGEKKHSLVGTLEKHKSAVNALALSTDGSVLYSGACDRSILVWEKNDSRNMVLVGALRGHTKAILCLVVVTDLVFSGSADNTVRIWKRGIEKSYTCLAVLQGHRKPVKCLAVTADSNSANNGVADDNNNNNNSYLVYSGSLDCDIKVWQIQVPLF. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01545 419 Gene3D - 175 235 IPR015943 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 271 IPR001680 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 351 - -
Seca10g01545 419 SUPERFAMILY WD40 repeat-like 60 414 IPR036322 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 262 - -
Seca10g01545 419 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 415 IPR045182 -
Seca10g01545 419 MobiDBLite consensus disorder prediction 19 58 - -
Seca10g01545 419 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Seca10g01545 419 Pfam WD domain, G-beta repeat 359 412 IPR001680 GO:0005515
Seca10g01545 419 Pfam WD domain, G-beta repeat 189 219 IPR001680 GO:0005515
Seca10g01545 419 Pfam WD domain, G-beta repeat 318 351 IPR001680 GO:0005515
Seca10g01545 419 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Seca10g01545 419 CDD WD40 66 413 - -
Seca10g01545 419 Gene3D - 51 174 IPR015943 GO:0005515
Seca10g01545 419 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Seca10g01545 419 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Seca10g01545 419 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Seca10g01545 419 FunFam BnaA09g28200D protein 178 266 - -
Seca10g01545 419 SMART WD40_4 357 413 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 59 96 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 223 262 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 314 351 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 105 143 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 181 220 IPR001680 GO:0005515
Seca10g01545 419 SMART WD40_4 269 308 IPR001680 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 351 IPR001680 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Seca10g01545 419 Gene3D - 236 417 IPR015943 GO:0005515
Seca10g01545 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01545 Seca-Chr10 16796298 16797578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01545 181 416 Miscellaneous Gene Families AT5G08390 22.500 3.81e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01545 - - cam:101511687 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01545 10 16796298 16797578 Seca10g01545 10 16796298 16797578 ECH