Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01508 ATGCTATGCTCTCTAATCCGTTTGCGCCGTTACGCTTCGACCCCACTTCTTCTTCAGCTCAGTAACCGTTTCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCATGGTTGCTCACGCGAAGGACGAGGCGTATCTGAACGCGGCGATACCGAAGCGCGTCCGGCTGTTCGAGGCGATTCAGGCGGAGCAGCGGACACTCCGGCTGTCTCTGTCGCCGGATCCTATAAAGGTGACCCTCCCCAATGGAAGCGTCAAGGACGGTAAGAAGTGGCAGACCACTCCTCTCGATGTGGCTCGCGACATCTCCAAGAACTTGGCCAACAACGCTCTCATCGCCAGGGTCAATGGCGTTCTCTGGGACATGAATCGTCCCCTCGAGGAGGATTGCGAACTTCAGATCTTCAAGTTCGAAGATGACGAAGGTCGCGACACTTTCTGGCACTCCAGCGCTCACATCCTCGGCCAGTCTCTTGAGACGGAGTATGGATGCAAACTCTGCATTGGGCCCTGCACCACCAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACCTGGGTCTGAATGATGATCACTTTAAACAAATTGAGGCTGGGGCTTTGAAGGCTGTTGCGGAAAAACAACCCTTTGAGCGAATTGAAGTTACACGAGATCAGGCACTTGAGATGTTTTCAGATAATAAGTTTAAGATCGAAATTATCAATGATTTGCCTGCCGATAAGACTATCACGGTATACAGATGTGGTCCCCTGGTTGACTTGTGTCGTGGACCACATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGTGAAAGTTTACAAAGAGTTTACGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCTTCGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCACCATGAATGGAGTCCGGGAAGCTGGTTTTTCCTTCCACATGGTGCTCGGATCTACAACAAACTCGTGGAGTTCATTCGAAATCAGTACAGAGATAGGGGCTATCAAGAGGTTAAGTATTAG 1110 0.4928 MLCSLIRLRRYASTPLLLQLSNRFSSSSSSSSAAAMVAHAKDEAYLNAAIPKRVRLFEAIQAEQRTLRLSLSPDPIKVTLPNGSVKDGKKWQTTPLDVARDISKNLANNALIARVNGVLWDMNRPLEEDCELQIFKFEDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLLRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLVEFIRNQYRDRGYQEVKY. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01508 369 FunFam Threonine--tRNA ligase, cytoplasmic 74 135 - -
Seca10g01508 369 Pfam TGS domain 76 136 IPR004095 -
Seca10g01508 369 Gene3D - 139 297 - -
Seca10g01508 369 CDD TGS_ThrRS 76 141 - -
Seca10g01508 369 Gene3D Bira Bifunctional Protein; Domain 2 299 369 IPR045864 -
Seca10g01508 369 SMART tRNA_SAD_4 244 293 IPR012947 GO:0004812|GO:0005524|GO:0043039
Seca10g01508 369 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 244 293 IPR012947 GO:0004812|GO:0005524|GO:0043039
Seca10g01508 369 Gene3D - 74 135 IPR012675 -
Seca10g01508 369 PANTHER THREONINE-TRNA LIGASE 44 368 - -
Seca10g01508 369 ProSiteProfiles TGS domain profile. 74 136 IPR004095 -
Seca10g01508 369 SUPERFAMILY ThrRS/AlaRS common domain 138 315 IPR018163 GO:0000166
Seca10g01508 369 SUPERFAMILY Class II aaRS and biotin synthetases 293 368 IPR045864 -
Seca10g01508 369 FunFam Threonyl-tRNA synthetase, mitochondrial 140 297 - -
Seca10g01508 369 SUPERFAMILY TGS-like 76 136 IPR012676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01508 Seca-Chr10 16335207 16344099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01508 K01868 - gmx:100812652 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01508 10 16335207 16344099 Seca10g01508 10 16335207 16344099 ECH