Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01495 ATGGCGGATTCCGCCCCTGCTCCTGCAAGTCTAGAACCCAACACCCAACGCTCTGAATCCGGAACTCCAAACCCGCCCGATCCAGTTCACCCATCAACCCAATCGCAATCTTCAACACCCTCATCCACCCCCCTCGCGGCGAACCCTAATTCAAATCCACCGTTAGCGTCTACACCGTCACTTCCTCCGCCGCCTACCTTATTATATGCGGCTGGAGCTCCGCCACAAATCCCTGGCGTCCTCCCTCCGTCGACGCCGTCATTCCGGCCTCTGGCTCCGCAAGTGCCCCAGTTCTCTCCCTTGCCTAATCCCGCCGGCGTCTACCAAAACCCTGCCGTCCCGCCGCCCGGCGTGGCCAGTGCCGCTGCGCCGGTTCCAGTGCCAGTGCCGCAGATGCAACCGATGGTATCGTATCAGGTCCCGTCAACTAATCCGGCCCTGCGACCCTTCGCACCGATCCCAAACGGTTACGCGGCGCCTCCACAAGGGACTGTTACTCCCGCGGGAATTCCTCGTTACCCCCCTCCATATGGAACTATGGTCCGTCCTGTATATCCTCCACGCCCTCCCGGAGCAGTTAATGTACTTCCAGTATCACGCCCGCCTGTTGCAGGAATCCCTACAATTCGCCCCATTATTCCTCCGGTTGTCAGACCTGTTGTTGCTCCTAGTGTTACTCCAGCTGAGATGCCACAAACCACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTTTCTATCCTTGAATTATGTGGACATATCAAGAGCTGGAAACGTCCTCAAGATTTATCAAGTGGAACTCCTAAAAGTTTTGGGTTTTTTGAGTTTGAGAATGCTGAAGGGGTTCTCCGTGCTCTGCGTCTCCTTACTAAATTAAATATTGATGGGCAAGAACTAATGGTCAACGTGGACGAAGCTATGAAAGCATATCTGGAGCGGTATGTTCAAAGAAAGACTGAGAACTCAAAGAAAAAAGAAACTCAGGCAGCAGGAGTTGAAAAAGATGATGAAGGTGCAAAACCCTCTGATGCCAATGATGATGCAAAGCCTGATGTAGAACACTCAAATAAGGAGGATAATGATTCAGGGAAAAAGAAATCCCATGATGTGACAAACTTTGGGATCGTCACAGATGAAGATAGGGATGCTGATCGAGATGCTTTAGAAAAGATAACAAAGATGATAGAGGAGAGGTTGAAGACAAGACCTTTGCCTCCACCACCTCCCCAGCCAACTGGTGATAGTTCTGTGAATTTAACTTCAGAACAACCTGCTAAAACAAGAGATGGAGACTCTGATGTGGATACAAAGAAGAATGAAACAGCTGAAGATAAAAATGAGAAAGAGACCAACAATGATAATAAACCAACCAGTGAACATGATAGACCTGAAACCCCTGATAGAAGACATGATAGGAAAAGCAGAGAGAGAGACCGAGATAGGGAACTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATATGAACGAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAGACGGAGGGTTGAGGAGGCTGAGCGTCAGTATGAAGCTTATTTGAAGGAATGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGCCAGTATGAAAAGGAAAAGGAGAAGGAAAGGGAGCGCAAACGGAGAAAGGAGATACTTTATGATGAGGAGGATGAGGATGAGGATTCTAGGAAGAGGTGGCGTAGAAATGTGCTAGAGGAGAAGAGAAAGAAGAGGTTGCGTGAAAAGGAAGATGACCTTGCTGACAGACAAAAAGAAGAGGATGAAATTGCTGAGGCCAAGAAGAGGGCCGAGGAGGATCAACAACAGAAGCGGCAGAGAGATGCACTGAAGCTATTATCAGAGCATGTGGTAAACAGTGGCGAGAAAACTATGGCTACTGAAGAGATTACTAATGAAGTCAAAAATATTGTTGCTGAACAAGATACTGTAGCTGATTATAATCATGAAGGTAGGACAGGTGATGGTACTTCACTGAATGCTATCAACGATGAATCAGCCATGGCATCTGTTGCTCCAACTGATACAGTGTCAAGTGGAATTGCTCCTACAAAGAAGTTGGGATTTGGTCTAGTTGGCTCAGGGAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGAAGAGGATGATGCACACAAGGATAAAAAAATGAGGCCCTTGGTTCCAATTGATTACTCAACAGAGGAACTGCAGGCTGTTCAACCTACCCCTTCTGGGCCAACACCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGTATATCCAGTACCAATTTCAAGGAAGAAAAGCTGGATGGAGAAAGGGATAGAAGTAGGCGTTCAAATGAGAGGTCTAATCACCGGGACAGAGACAAGGGTGATGAAGATGGTACTCACAACAGGGATGAAAACAAGGAGAAAATTCCTGACCGTGACAGGGATCGAGATCATGGGTCGGAGAAACCTAAGACTTATGATAACAAGAGGCTTTTGGATGCAAAACAGTTAATTGATATGATACCAAAAACAAAGGAGGAGTTGTTCTCATATGAGATAGACTGGACAGTGTATGACAAGCATCAATTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAAAACACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCATCCCAAATGCTAGAGCGTCTTCAGATCATTTTAGACGAAGAGGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGGCTTGCTTTGAGGTCAAAATCATGA 2859 0.4603 MADSAPAPASLEPNTQRSESGTPNPPDPVHPSTQSQSSTPSSTPLAANPNSNPPLASTPSLPPPPTLLYAAGAPPQIPGVLPPSTPSFRPLAPQVPQFSPLPNPAGVYQNPAVPPPGVASAAAPVPVPVPQMQPMVSYQVPSTNPALRPFAPIPNGYAAPPQGTVTPAGIPRYPPPYGTMVRPVYPPRPPGAVNVLPVSRPPVAGIPTIRPIIPPVVRPVVAPSVTPAEMPQTTVYIGKIASTVENEFMLSILELCGHIKSWKRPQDLSSGTPKSFGFFEFENAEGVLRALRLLTKLNIDGQELMVNVDEAMKAYLERYVQRKTENSKKKETQAAGVEKDDEGAKPSDANDDAKPDVEHSNKEDNDSGKKKSHDVTNFGIVTDEDRDADRDALEKITKMIEERLKTRPLPPPPPQPTGDSSVNLTSEQPAKTRDGDSDVDTKKNETAEDKNEKETNNDNKPTSEHDRPETPDRRHDRKSRERDRDRELKREKERELERYEREAERERIRKEREQRRRVEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRNVLEEKRKKRLREKEDDLADRQKEEDEIAEAKKRAEEDQQQKRQRDALKLLSEHVVNSGEKTMATEEITNEVKNIVAEQDTVADYNHEGRTGDGTSLNAINDESAMASVAPTDTVSSGIAPTKKLGFGLVGSGKRTTVPSVFHEEEDDAHKDKKMRPLVPIDYSTEELQAVQPTPSGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNERSNHRDRDKGDEDGTHNRDENKEKIPDRDRDRDHGSEKPKTYDNKRLLDAKQLIDMIPKTKEELFSYEIDWTVYDKHQLHERMRPWISKKIKEFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS. 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01495 952 MobiDBLite consensus disorder prediction 55 97 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 9 23 - -
Seca10g01495 952 Coils Coil 482 531 - -
Seca10g01495 952 Gene3D - 228 336 IPR012677 -
Seca10g01495 952 MobiDBLite consensus disorder prediction 772 837 - -
Seca10g01495 952 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 37 952 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 690 837 - -
Seca10g01495 952 Coils Coil 592 619 - -
Seca10g01495 952 Gene3D PWI domain 832 947 - -
Seca10g01495 952 CDD RRM_RBM25 233 316 IPR034268 -
Seca10g01495 952 MobiDBLite consensus disorder prediction 1 97 - -
Seca10g01495 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Seca10g01495 952 SMART rrm1_1 234 307 IPR000504 GO:0003723
Seca10g01495 952 Pfam PWI domain 875 938 IPR002483 GO:0006397
Seca10g01495 952 ProSiteProfiles PWI domain profile. 855 952 IPR002483 GO:0006397
Seca10g01495 952 MobiDBLite consensus disorder prediction 324 383 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 587 632 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 717 738 - -
Seca10g01495 952 Coils Coil 534 562 - -
Seca10g01495 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Seca10g01495 952 MobiDBLite consensus disorder prediction 587 628 - -
Seca10g01495 952 FunFam RNA Binding Motif protein homolog 831 947 - -
Seca10g01495 952 SUPERFAMILY PWI domain 873 940 IPR036483 GO:0006397
Seca10g01495 952 SUPERFAMILY RNA-binding domain, RBD 218 309 IPR035979 GO:0003676
Seca10g01495 952 MobiDBLite consensus disorder prediction 431 520 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 401 520 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 31 54 - -
Seca10g01495 952 MobiDBLite consensus disorder prediction 536 574 - -
Seca10g01495 952 SMART pwi_2 868 941 IPR002483 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01495 Seca-Chr10 16162722 16169347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01495 K12822 - gmx:100809428 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01495 10 16162722 16169347 Seca10g01495 10 16162722 16169347 ECH