Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01483 ATGGCAGCAAATAAACACCTGTTAGATCATAGAGTAACTCTGTCCTCACCTTCCCCTGCACTCTGCTTTGTGGAGACTGAGCCTCAAGATGCACAAAATTCTCATATTACAGCTTTTAATACAGGAGATGGATCACCAAAGTCAGATAATGAGTCAACTTCATCCAACACCATAAGGGATGTACATATTTCAATGCGGTTAGCAGAGGACTTTCTTGATCTTGCTAAGGAAAATACAGAAAAGGATCTGGAAACATGTGGTATACTTGGTGCCTTTCTTGAGAAGGGAACCCTCTATATGACTACTCTGATCATACCAAAGCAGGAATCAGCTTCTAACTCTTGTCAAGCTACAAATGAGGAGGAAGTTTTCTCAATTCTAAATGAAAGATCCCTTTATCCTGTGGGATGGATCCATACGCATCCTTCTCAAAGTTGTTTCATGTCTTCAGTGGATCTGCACACTCAATATTCCTACCAGGCAATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAAATGATACCTCAAGGAAATGTGGACTATTTCGCCTATCTGACCCTGATGGAATGAATATTCTAAGAAATTGCCAGGAGAAGGGATTTTATCCCCACAAAGAACCAGACAATGGCAAACCTGTGTATGAGCACTGCTCCAATGTGTACAAAAACTCCAACCTAAGGTTTGAAATCTTTGATTTACGCTAA 708 0.4096 MAANKHLLDHRVTLSSPSPALCFVETEPQDAQNSHITAFNTGDGSPKSDNESTSSNTIRDVHISMRLAEDFLDLAKENTEKDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCQATNEEEVFSILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPNDTSRKCGLFRLSDPDGMNILRNCQEKGFYPHKEPDNGKPVYEHCSNVYKNSNLRFEIFDLR. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01483 235 CDD MPN_AMSH_like 58 235 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Seca10g01483 235 PANTHER AMSH-LIKE PROTEASE 9 235 - -
Seca10g01483 235 SUPERFAMILY JAB1/MPN domain 61 189 - -
Seca10g01483 235 Gene3D Cytidine Deaminase, domain 2 40 235 - -
Seca10g01483 235 MobiDBLite consensus disorder prediction 35 58 - -
Seca10g01483 235 ProSiteProfiles MPN domain profile. 61 191 IPR037518 -
Seca10g01483 235 SMART pad1_6 60 188 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca10g01483 235 FunFam AMSH-like ubiquitin thioesterase 2 41 235 - -
Seca10g01483 235 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 58 165 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01483 Seca-Chr10 15986202 15991023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01483 K11866 - gmx:100807282 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01483 10 15986202 15991023 Seca10g01483 10 15986202 15991023 ECH