Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01438 ATGGCGTCGTCGGAGGAGAAGCGACTGGAGGAAGACTTGTCGTACCCGATTCTGGTGGCGGAGCGAGTTCGCTCGGCGGTTGAGGAAGCCGAGTCATTCAAGCTCGAGTGCTCTGAAGTGTGGAAGCACGTGGATCGCCTCCTCCAAATGCTCCGAACGGTGGTTCGTTTCGCCGCCTCGCCGCCGCTCTACGAGCGCCCCGTCCGGCGCGTCGCCGCCGAGACGGCGAAGAATCTAGAACGTGCCCTAACCCTTGTTCGCAAGTGCAAGCGCCGGAGCATCCTCCACCGCGTGGTCAGCATCGTCAGCGCCGCCGATTTCCGCAAGGTCCTCGGCTACCTCGACGCCTCCGTCGGAGACATGCGGTGGCTCCTCAACATCCTCGACGCCGGAGGCGGCGGCGGCGGCGGAATTGACCTGTCCCTCCCTCCCATTGCCAGCAACGACCCTATTCTGTCTTGGGTATGGTCTTTTATTGCTTCCATTACAATGAGTCAATTGAATGATAGAATTGAAGCTGCTAATGAACTAGCTTCCCTTGCTCAAGATAACGATAGGAATAAGAAGATCATAGTTGAGGAAGGTGGGGTGCCTCCCTTGTTGAAGCTCTTCAAGGAAGGTACTTCCCCTGCCGCTCAGATTGCGGCTGCTACTGCTTTGTGTCATTTGGCCAATAATTTGGAGAGAGTTAGAGTGATTGTGAATGAGCTTGGGGTTCCTGCTGTTGTGCAGGTGCTTGGTGATTCCCCCATGAAGGTTCAAACCCTCGCTGCCAATTTGGTGGCAAGGATGGCTAAGCATGATCCTGTTGCTCAGGAGGATTTTGCGAGGGAGAATGCAATCAGGCCTCTTGTCACACTGTTGTCATTTGATATGGCTGTGGATGAACAATTGGGGAAGCAGAGTATTCATTCTATTGTTCAGATTAATAAGGAATTGGGGAAGAAGTCATCAGATGGGTCTGGTGGTAATAGGAAGTTTGTGAATTCATATTCGAATTCTTATTTCTATATGGAGGGAAGTAGCCGTGGAGGGAACCATAGGAAAGAGAGGGAGAATGAGGATCCTGCAGTGAAGCTTCAGCTGAAAATTAGTTGTGCTGAGGCCTTGTGGATGCTTGCGAGAGAAAATGTGTCCAACAGTAGGAAGATAACTGAGACCAAAGGGATGCTTTGTTTGGCTAAGATGATTGAGAAGGAACAAGGAGAGCTGCAGCGCAATTGCTTGTTTGTGATAATGGAGATAACAGCTGCAGCTGAATCCAATGCTGACCTTCGACGTGCAGCATTTAAGACTAACTCTCCTGCTGCTAAAGCTGTTGTGGAACAGCTCTTGAGGATAATCAAAGAGGTGGACAGCCCATCATTGCAAATTCCAGCGATAAAGTCAATTGGTTCATTGGCTAGGACATTTCCTGCTAGAGAGACTCGGGTAATTGAGCCTCTAGTGACGCAGCTGGGTAATAGAAACACAGATGTAGCAGATGAAGCAGCCATTGCTCTTACCAAGTTTGCTTCTCCAGATAATTTCCTGTATGTGGAGCATTCTAAGACAATAATTGAATACAATGCAGTCCCAGCAGTGATGAGACTGCTAAGGAGTAATGAAGTTACCCAGATGCATCATGGGCTAACTCTTCTTTGCTACCTTGCACTGCATGCTGGTAACAGCGAGTCCTTGGAACAAGCTAGGGTGTTGACAGCTCTAGAGGGTGCAGATAGAACTGTTCTTCCTCAACATATAAGAGAATTGGTCTCCAGGGCAATAGTCCACCTCAATTTGTATCACGCTGGAAGGAATTCTCAAAGGATGTCATTCTTACCTTGA 1827 0.4948 MASSEEKRLEEDLSYPILVAERVRSAVEEAESFKLECSEVWKHVDRLLQMLRTVVRFAASPPLYERPVRRVAAETAKNLERALTLVRKCKRRSILHRVVSIVSAADFRKVLGYLDASVGDMRWLLNILDAGGGGGGGIDLSLPPIASNDPILSWVWSFIASITMSQLNDRIEAANELASLAQDNDRNKKIIVEEGGVPPLLKLFKEGTSPAAQIAAATALCHLANNLERVRVIVNELGVPAVVQVLGDSPMKVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLLSFDMAVDEQLGKQSIHSIVQINKELGKKSSDGSGGNRKFVNSYSNSYFYMEGSSRGGNHRKERENEDPAVKLQLKISCAEALWMLARENVSNSRKITETKGMLCLAKMIEKEQGELQRNCLFVIMEITAAAESNADLRRAAFKTNSPAAKAVVEQLLRIIKEVDSPSLQIPAIKSIGSLARTFPARETRVIEPLVTQLGNRNTDVADEAAIALTKFASPDNFLYVEHSKTIIEYNAVPAVMRLLRSNEVTQMHHGLTLLCYLALHAGNSESLEQARVLTALEGADRTVLPQHIRELVSRAIVHLNLYHAGRNSQRMSFLP. 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01438 608 Pfam Armadillo/beta-catenin-like repeat 184 224 IPR000225 GO:0005515
Seca10g01438 608 Gene3D - 11 127 IPR036537 GO:0007166
Seca10g01438 608 Coils Coil 164 184 - -
Seca10g01438 608 PANTHER ARMADILLO REPEAT ONLY 4 8 597 - -
Seca10g01438 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 238 IPR000225 GO:0005515
Seca10g01438 608 SUPERFAMILY ARM repeat 167 569 IPR016024 -
Seca10g01438 608 Gene3D - 350 427 IPR011989 -
Seca10g01438 608 Gene3D - 428 603 IPR011989 -
Seca10g01438 608 Gene3D - 159 332 IPR011989 -
Seca10g01438 608 SMART arm_5 466 506 IPR000225 GO:0005515
Seca10g01438 608 SMART arm_5 512 552 IPR000225 GO:0005515
Seca10g01438 608 SMART arm_5 226 266 IPR000225 GO:0005515
Seca10g01438 608 SMART arm_5 183 225 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01438 Seca-Chr10 15451736 15453562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01438 - - gmx:100779659 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01438 10 15451736 15453562 Seca10g01438 10 15451736 15453562 ECH