Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01307 ATGGGCAAAAAGAAACCCAAAGATCTTCAACAAACACCCCAAAGCGACGCCGTTTCACCCCCTTCCGGCATTTTCAATACGCTCTTTGCCAGCGCGCCGGAACAGACCACCGCCGCATCGCTATTTTCCGAAGACAACCCTTTTCGGAGAAAGCCTCCACAACCTGTTTCGGCTTCCGACGCACCCAACCATACTCAGAGCCCCAACACCGGGGGCTCCGTGAACCACGATACCGGAGACGAGAAGAAGAGGAAAAGGAACAAAGAGAAAATCCCCACCCTTGATTCGGATTCCGTAATCGAAGCTTCAGAGAAGAAGAGGAAACAGGGTTCGGGTGACATTAATTTGGGTGAGCAAGCAATTGGGAAAGGCGAAGAGGGGAAGAGGAAGAAGAGGAAAAGGGATGAGCTTGAGAAAGAGTGGGAAGGTAGGAAGTATGGGGTGGTGGATGGAGGAGATGAAGGTGAAAGGGAAGAGTCTGAGAATAAAAAAACTGTTGGGAGCAAGAGGAAGGTGCTGGATAATCCCGCTGATATGTTGATTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGAACTATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTTTGTTGAAAGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTGAGGATTCGTTCTGTACCTTTACAAGATGTAGGTATTCCTTTTACCAAAAAACCTAGAAAGGGGGCTATCCTTTCAAAGAAAATAAATGATTCGGCTGATAGTGTTCACGCATACATAGTTTTCAAAACTGAGCAATCTGCACAGGCTTCTTTGTCCCACAACATGACTGTGGTTGAAGGAAATCACATCCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACTTAAAGGGGAGAGTACTCCGCTTTATGATAATAAAAGAACTGTTTTTGTAGGCAACCTGCCATTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGCATATCCAACCTAGAATCAAGTATAGAAGCTGTTAGAGTGGTTCGGGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTACGTGCTGTTTAAAACAAAGGAAGCTGCTAATTTTGTTGTTAAGAAACGGAAGCTGAAGCTTAGAGATCGAGAGTTGAGAATCTGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCGAACCCATCATCCCCAGCACAAGCTCCTAGTACCCCTGCAAAGAAGCTGTCTGTAGCTCCAAGGTCTCCTTCAAGTAGTAATAACAGGTCTAGCAGAAAAACTAATTCATCTTATCAGGGTCTGCGTGCAACCAAATCTAATACCCACAAGAAAATTCATGGAGGAGAAAAAACAACAGAGCGCAAGATGAAAAGACCAGCAGTAGCTGCCAGAAAGGCTAAAGCAAATTTTCTCAAGGAGGGTGGTACACCGAAACAAGCAGGGTCAAAACGCAAGCTTGATAGTCGTACTCCAGATAAACAAGCAGGGTCAAAACGCAAGCTTGATAGTCGTACTCCAGATAAACAAGCAGGGTCAAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCCGACGAATTAAGAAAGCCAAAAAGAACAGGTAG 1623 0.4461 MGKKKPKDLQQTPQSDAVSPPSGIFNTLFASAPEQTTAASLFSEDNPFRRKPPQPVSASDAPNHTQSPNTGGSVNHDTGDEKKRKRNKEKIPTLDSDSVIEASEKKRKQGSGDINLGEQAIGKGEEGKRKKRKRDELEKEWEGRKYGVVDGGDEGEREESENKKTVGSKRKVLDNPADMLISKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPLQDVGIPFTKKPRKGAILSKKINDSADSVHAYIVFKTEQSAQASLSHNMTVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKEAANFVVKKRKLKLRDRELRICHAKADATPSKRPNPSSPAQAPSTPAKKLSVAPRSPSSSNNRSSRKTNSSYQGLRATKSNTHKKIHGGEKTTERKMKRPAVAARKAKANFLKEGGTPKQAGSKRKLDSRTPDKQAGSKRKLDSRTPDKQAGSKRKLDSRTPDSSRRIKKAKKNR. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01307 540 MobiDBLite consensus disorder prediction 484 530 - -
Seca10g01307 540 MobiDBLite consensus disorder prediction 1 170 - -
Seca10g01307 540 Gene3D - 299 398 IPR012677 -
Seca10g01307 540 MobiDBLite consensus disorder prediction 448 465 - -
Seca10g01307 540 MobiDBLite consensus disorder prediction 11 43 - -
Seca10g01307 540 Gene3D - 190 298 IPR012677 -
Seca10g01307 540 MobiDBLite consensus disorder prediction 122 170 - -
Seca10g01307 540 MobiDBLite consensus disorder prediction 58 75 - -
Seca10g01307 540 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 290 481 - -
Seca10g01307 540 SUPERFAMILY RNA-binding domain, RBD 194 336 IPR035979 GO:0003676
Seca10g01307 540 SUPERFAMILY RNA-binding domain, RBD 306 401 IPR035979 GO:0003676
Seca10g01307 540 SMART rrm1_1 311 387 IPR000504 GO:0003723
Seca10g01307 540 SMART rrm1_1 195 289 IPR000504 GO:0003723
Seca10g01307 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 391 IPR000504 GO:0003723
Seca10g01307 540 CDD RRM2_RBM34 311 387 IPR034221 -
Seca10g01307 540 MobiDBLite consensus disorder prediction 416 444 - -
Seca10g01307 540 MobiDBLite consensus disorder prediction 389 540 - -
Seca10g01307 540 CDD RRM1_RBM34 194 289 - -
Seca10g01307 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 293 IPR000504 GO:0003723
Seca10g01307 540 MobiDBLite consensus disorder prediction 76 112 - -
Seca10g01307 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 227 IPR000504 GO:0003723
Seca10g01307 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 385 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01307 Seca-Chr10 13113512 13116441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01307 K14837 - gmx:100809622 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01307 10 13113512 13116441 Seca10g01307 10 13113512 13116441 ECH