Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01290 ATGGAAGCAAAAACCGCAAAGGCATTGGATAGAATTGCACTTGATCTGAAGAGAAAGCGGGCTACCCGATGTGCTGTGCATTTAAATGGAGATTCGCGACCAGTGGTTGTCAAGCAAATGAGGTTGGGCAGATATGAAAGCAAACTGACAAATGGTGGTCCTCGTATTGGACTGTCCTTAGTTAGGGGTTATTTGAACTATAAGAAGAGTGAGAGGCTTGATCGTTTGATGTTCTATATGAACGGAAAATGGTTGGACTATCCTAAGGATGTTGTTGACCGGGTTAAAAAAGATTTTGAAATCAAGAAGGCAGCTGTGGAGGTAGAGTTAAATGGCCGTGATCTTGTGCTAGATTTTTCACATATGTATCAGGTGGATCTGAAAACTGGTTTGCAGCAACCTATTGCTTGGATTGATGAGACAGGGTGCTGCTTTTTCCCTGAAGTCTTTGCCGCTTCTGATGAAGAGTCTTGTTTATGTGATCAGGAGGGTGGAAAAAGTCATGATTCGTATGAATCTAATGGAATAAAATTACATTTAGAAATTGAAATAAATGAGGCAGATGAATCCAAGTTGAGGGAGTGTAGTGGGGAGTCCAATACTTTAGATAAGAATGCTCAAATTGATACTGAACAAAACCGCTGTCAATATGATGTAGAAGTTAGAGGAAGCACCAATAAGGTGCACTACAGAAATGTTGGTGAAGCCATTGAGCAAAATCAAGACATAGGTTTAGATACTTATACTGAATCCGGATATGGAATACTGGATTTGGATTCTGTACAGGAGATGTTTCTAACAGGAATGAGTAGTTTTGGCTGTACTGATACTGACATAGTTGAGATACACCGCTGCTTAAGTACGTCAATGCAAGCACGATTGGAGCTATTCCGGAAGCAATCTGAAATTACAAAAAAAATTCACGGGGATGCTAATGTTCGATATGCCTGGCTCTCTTCTTCTAAAGGAGAATTATCTAAGATGATGGAGTATGGGCTTGGTCATTGTGGACTGTCTGCGTCTAAATGCCCATATGGTGTTGGTCTTCACCTTGCAGCTTTTAACTGCCCTCATGCCAGTGCGCATGATTGTGATGTTGACGAAAATGGGGTTCGGCACATGGTCCTTTGTCGTGTAATAATGGGGAACATGGAGGTTCTCCGTCCTGGCAGTGGTCAGTTTCATCCCAGTAGTTATGAATATGACAATGGGGTGGATGACATTCAATGCCCAAGATACTATATAGTATGGAATATGAATATGAACACTCACATCTATCCAGAATACATTGTTAGTTTCAGGGTCTCTTTGGATGCTGGAGGCTATTTTTGTGAAAGTCGGAGTAAGAAAAATGTTTCTGGCGACAATTCGGTCAGTCATGGTTCTTGTGACATGTTACATTCAGACTCCTCTACAGTGGATTCTGGAAAAGCTGCTAGTAAGGTTGCTAGCACCCGAAAAATTCCTAAATCCCCTTGGCTGCCTTTTTCTCTGCTTTTTGCTGCTATCAGTGACAAGGTTCCTCCCAAGGATATGGGTCTTATCAGAACACATTATGTACAATTCACGGTATGTGAAGTAGCTCCAATCGATGTCTGCCTGTTTTGA 1608 0.4154 MEAKTAKALDRIALDLKRKRATRCAVHLNGDSRPVVVKQMRLGRYESKLTNGGPRIGLSLVRGYLNYKKSERLDRLMFYMNGKWLDYPKDVVDRVKKDFEIKKAAVEVELNGRDLVLDFSHMYQVDLKTGLQQPIAWIDETGCCFFPEVFAASDEESCLCDQEGGKSHDSYESNGIKLHLEIEINEADESKLRECSGESNTLDKNAQIDTEQNRCQYDVEVRGSTNKVHYRNVGEAIEQNQDIGLDTYTESGYGILDLDSVQEMFLTGMSSFGCTDTDIVEIHRCLSTSMQARLELFRKQSEITKKIHGDANVRYAWLSSSKGELSKMMEYGLGHCGLSASKCPYGVGLHLAAFNCPHASAHDCDVDENGVRHMVLCRVIMGNMEVLRPGSGQFHPSSYEYDNGVDDIQCPRYYIVWNMNMNTHIYPEYIVSFRVSLDAGGYFCESRSKKNVSGDNSVSHGSCDMLHSDSSTVDSGKAASKVASTRKIPKSPWLPFSLLFAAISDKVPPKDMGLIRTHYVQFTVCEVAPIDVCLF. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01290 535 ProSiteProfiles RST domain profile. 487 535 IPR022003 -
Seca10g01290 535 Pfam RCD1-SRO-TAF4 (RST) plant domain 489 522 IPR022003 -
Seca10g01290 535 SUPERFAMILY ADP-ribosylation 260 435 - -
Seca10g01290 535 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 59 523 IPR044964 -
Seca10g01290 535 ProSiteProfiles WWE domain profile. 62 137 IPR004170 -
Seca10g01290 535 ProSiteProfiles PARP catalytic domain profile. 235 454 IPR012317 GO:0003950
Seca10g01290 535 Gene3D - 256 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01290 Seca-Chr10 12941742 12946482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01290 - - gmx:100800707 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01290 10 12941742 12946482 Seca10g01290 10 12941742 12946482 ECH