Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01283 ATGACCGGTTCTTTCGCTTACTCTGTGGCACACGCCATCTCTTCTCCCTGCCTCCAAAATAAGACCATGTTTATCCTCTCCTCACCGCCAACCACATTCTTCCCTGTTCCTAGGGTTCCTTTCTCTCACTCCTCTTCTAAGCCTTCTTCTTCTTCTTCTTCCATTTCTTTGCGATCCGCAACCACTCCCTCACTTTCTGCTTCTTGCTCTTGCTCCTGCTCACTCACCTTCAAGGTTAAAGCCAAGGAGAACGTTGTGTCCGCCAACATGGCCGCCTCCGTCTCTTCCCGCACTTTCCTCAATGCTCGAAATGAACAAGAGCTTCTTGCTGGAATAAGGAAGGAAGTAGAAGCGGGATCTCTGCCTCCTAATGTTGCTGCAGGGATGGAAGAAGTGTACAACAACTATAAAAGTGCAGTTATCAAAAGTGGAGTTCCCAAAGCAAATGAGACTGTATTATCAAATATGTCTGTTTTTTTAGATCGCGTATTTTTGGATGTAACGGATCCTTTTGTCTTCCAACCACATCACAAAGCGAAGAGAGAGCCTTTTGACTACTACATGTTTGGTCAAAATTACATCCGTCCTTTAGTCGATTTCAGAAATTCTTATGTTGGCAACATGTCCGTTTTCATCGAAATGGAAGAGAAACTTAAGCAGGGACATAATATAATCTTAATGTCAAATCACCAAACTGAAGCAGATCCAGCTATTATTGCACTGCTGCTTGAATCGCGACTTCCATATATTGCTGAAAACATGACCTATGTAGCAGGAGATAGAGTTGTAACTGATCCTCTGTGCAAGCCCTTCAGTATTGGCAGGAATCTCATTTGTGTTTACTCTAAAAAACACATGCTTGATGATCCAGAACTTATAGAGATGAAAAGAAAAGCAAATACACGAAGTCTGAAGGAAATGGCTGTGCTTTTAAGGAGTGGATCACAGATAGTCTGGATTGCCCCAAGCGGTGGTAGGGATCGACCAGATCCCCGCATCGGAGAATGGGTGCCAGCACCCTTTGACACTTCTTCAGTAGATAATATGCGAAGGCTTGCTGAACATTCTGGTACACCAGGTCATATATATCCTTTGGCAATATTGTGCCATGATATAATGCCCCCTCCACAAAAGGTTGAAAAAGAAATTGGGGAGAAAAGAATTATATCCTTTCATGGGGCTGGCTTATCAGTGGCTCCAGTGATAAGCTTTTCTAAAACCACTGCTGCTTGTGAAAATCCTGAAATGGCTAAGGAGGCATATACAAAAGCCTTGTACGATTCTGTGACTGAGCAATATAATGTGTTGAAGTCTGCCATACACGGAAAAAAAGGATTAGAAGCATCAACTTCTGCAGTTTCTTTGTCACAGCCATGGACCTAG 1383 0.4317 MTGSFAYSVAHAISSPCLQNKTMFILSSPPTTFFPVPRVPFSHSSSKPSSSSSSISLRSATTPSLSASCSCSCSLTFKVKAKENVVSANMAASVSSRTFLNARNEQELLAGIRKEVEAGSLPPNVAAGMEEVYNNYKSAVIKSGVPKANETVLSNMSVFLDRVFLDVTDPFVFQPHHKAKREPFDYYMFGQNYIRPLVDFRNSYVGNMSVFIEMEEKLKQGHNIILMSNHQTEADPAIIALLLESRLPYIAENMTYVAGDRVVTDPLCKPFSIGRNLICVYSKKHMLDDPELIEMKRKANTRSLKEMAVLLRSGSQIVWIAPSGGRDRPDPRIGEWVPAPFDTSSVDNMRRLAEHSGTPGHIYPLAILCHDIMPPPQKVEKEIGEKRIISFHGAGLSVAPVISFSKTTAACENPEMAKEAYTKALYDSVTEQYNVLKSAIHGKKGLEASTSAVSLSQPWT. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01283 460 Gene3D - 170 451 - -
Seca10g01283 460 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 96 459 - -
Seca10g01283 460 CDD LPLAT_GPAT 201 436 - -
Seca10g01283 460 SMART plsc_2 224 370 IPR002123 GO:0016746
Seca10g01283 460 Pfam Acyltransferase 210 367 IPR002123 GO:0016746
Seca10g01283 460 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC 23 459 IPR016222 GO:0004366|GO:0006650
Seca10g01283 460 Pfam Glycerol-3-phosphate acyltransferase N-terminal 96 171 IPR023083 GO:0004366
Seca10g01283 460 Gene3D - 94 169 IPR038114 -
Seca10g01283 460 PIRSF G3POAT 1 460 IPR016222 GO:0004366|GO:0006650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01283 Seca-Chr10 12795860 12806446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01283 48 460 Acyl Lipid Metabolism Gene Families AT1G32200 65.375 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01283 K00630 - gmx:100789434 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01283 10 12795860 12806446 Seca10g01283 10 12795860 12806446 ECH