Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01217 ATGGGTAAGGGTAATCCACACAAATCGGGGGCCGGCGACGACCTTCATGCGGCGGCAAGGTCCGGTGATATGGTCGCCGTTCAATCAATTTTGCTTTCAAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCACTACATTTAGCAGCATTTGCTGGTCAAGCAGAGGTAGTTAGTTATCTTTGCAAGCACAAGGCTGATGTTGGTGCTTCTGCCATGGATGACATGGCTGCAATACACTTTGCTGCACAGAAGGGACATTTAGAAGTTGTTCGGGCTCTACTTGCAGCTGGGGCCTCTGTCAAAGCCTCTACTCGCAAAGGCATGACTTCATTACACTATGCTGCTCAAGGTTCCCACCTGGAGCTTGTCAAGTACTTGGCCAAGAAAGGGGCAAGTCTTACTGCCAAGACAAGGGCAGGAAAGACCCCTTTGGATCTTGCTACCAATGAAGAAGTCCACTCCTTTCTGGAGGAATTTGAAAGATCAGCTAAGAATGGAGAATCGAAAGACAAAGAGAAAGCAGAAGAATCTGATCCAAAGACATCCACACTGGAATCGGAAGGTAATTTGAGTGCTGAACCTCTTCAAGCTGCTGTTGATGAAGAAAACAGTGATAGAGAGAAGAGGAAGGGTAATGAAGATGACACAAGGGAAGACTCATCACAACCAAAAAAGGCGAGAGTTAAGTTAAGCCATCTTCAAAATTCAGATGATACCCAAGAAGAAGAAAATCTGTAG 750 0.4573 MGKGNPHKSGAGDDLHAAARSGDMVAVQSILLSNPLAVNSRDKHSRTPLHLAAFAGQAEVVSYLCKHKADVGASAMDDMAAIHFAAQKGHLEVVRALLAAGASVKASTRKGMTSLHYAAQGSHLELVKYLAKKGASLTAKTRAGKTPLDLATNEEVHSFLEEFERSAKNGESKDKEKAEESDPKTSTLESEGNLSAEPLQAAVDEENSDREKRKGNEDDTREDSSQPKKARVKLSHLQNSDDTQEEENL. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01217 249 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Seca10g01217 249 ProSiteProfiles Ankyrin repeat region circular profile. 110 142 - -
Seca10g01217 249 Pfam Ankyrin repeats (3 copies) 77 140 IPR002110 GO:0005515
Seca10g01217 249 Pfam Ankyrin repeats (3 copies) 15 73 IPR002110 GO:0005515
Seca10g01217 249 MobiDBLite consensus disorder prediction 165 186 - -
Seca10g01217 249 ProSiteProfiles Ankyrin repeat region circular profile. 77 106 - -
Seca10g01217 249 PRINTS Ankyrin repeat signature 45 60 IPR002110 GO:0005515
Seca10g01217 249 PRINTS Ankyrin repeat signature 93 107 IPR002110 GO:0005515
Seca10g01217 249 Gene3D - 7 76 IPR036770 -
Seca10g01217 249 MobiDBLite consensus disorder prediction 203 243 - -
Seca10g01217 249 ProSiteProfiles Ankyrin repeat region circular profile. 44 71 - -
Seca10g01217 249 SUPERFAMILY Ankyrin repeat 15 163 IPR036770 -
Seca10g01217 249 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED 25 163 IPR042334 -
Seca10g01217 249 SMART ANK_2a 44 73 IPR002110 GO:0005515
Seca10g01217 249 SMART ANK_2a 77 106 IPR002110 GO:0005515
Seca10g01217 249 SMART ANK_2a 110 139 IPR002110 GO:0005515
Seca10g01217 249 MobiDBLite consensus disorder prediction 165 249 - -
Seca10g01217 249 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Seca10g01217 249 ProSiteProfiles Ankyrin repeat profile. 110 142 IPR002110 GO:0005515
Seca10g01217 249 Gene3D - 77 181 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01217 Seca-Chr10 12011783 12013590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01217 13 154 Miscellaneous Gene Families AT2G31820 33.793 2.05e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01217 - - lang:109349041 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01217 10 12011783 12013590 Seca10g01217 10 12011783 12013590 ECH