Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01208 ATGCATACCAATAGTTTCTTGATACTTTGTTACTACTTACTAGGATTGTCATTCAGTTCTTTCATGGCTTCGGCATTACGGTGTCCACCGTTTGAATTTTCTGCCAAATACTATCATTTGTCTGAAAATGGAGGTGGCTGTGTGAGGCAGACCAGTTTCTTTGAAGGCAAACCTGTGCTTGATCAGGGAGTTGGTTACTCTGTCATTCTTGGTTTTGGTGCCTTCTTTGCTCTCTTCACCTCTTTCTTGGTATGGCTAGAGAAGCGGTATGTGGGGTCCCGTCACACCTCTGAATGGTTCAATACAGCAGGAAGAAGTGTTAAGACAGGGCTCATTGCCAGTGTTATTGTGTCTCAGTGGACTTGGGCTGCTACAATCCTGCAAAGCTCTAATGTTGCTTGGGAGTATGGGGTTAGTGGACCTTTCTGGTATGCTAGTGGAGCTTCCATCCAGGTATTGTTGTTTGGAATCATGGCTATAGAGATTAAAAGGAAGGCTCCTCATGCTCATACTGTGTGTGAAATTGTCAAAGCCCGTTGGGGGACTTCTGCGCATATTGTATTCCTCTTCTTCTGCTTCCTGACAAACATAATTGTAACTGCCATGTTGCTCCTTGGTGGCTCTGCGGTTGTAAATGCATTAACTGGAGTGAATATTTATGCTGCTAGCTTTCTAATACCACTTGGAGTAATTGTCTATACACTAGCTGGTGGACTAAAGGCCACGTTCTTAGCAAGCTATATACATTCTGTCATAGTACACATTGTTCTGGTCATTTTTGTCTACCTTGTCTATACTGCTAGCAGTGAGCTTGGTAGCCCCACTGTTGTTTACAATCGCCTGCTCGAAGTTGCAAGCAAATCAAGAACATGTCAGGATCCTATATCACACCATGGACAATCTTGTGGTCCTGTCAGTGGGAATCATGAAGGTTCTTATCTAACGATGTTGAGTTCAGGTGGCTTAGTTTTTGGGATTATAAACATTGTTGGCAACTTTGGCACTGTGTTTGTTGACAATGGATATTGGGTGAGTGCCATTGCTGCTAGACCTTCATCAACTCATAAGGGCTATTTGTTGGGAGGCTTGGTCTGGTTTGCAGTGCCATTTTCTTTGGCTACATCACTGGGTTTAGGAGCCCTAGCCCTTGATTTACCAATAAATGAGAGTGAGGCAATTCGTGGTCTTGTTCCCCCTGCTACTGCTGTAGCTTTGATGGGGAAAGGAGGATCTGTTCTTCTTCTTACCATGCTTTTCATGGCAGTGACTTCTTCTGGTTCATCAGAACTGATTGCAGTGTCCTCATTATGCACATATGACATATACCGTACTTACATAAATCCTAATGCAAGTGGAAAGAAAATCCTCAAAGTGTCAAGGGCTGTTGTCCTAGGCTTTGGGTGTTTCATGGGATTGCTAGCAGTTATACTGAACAAGGCTGGAATTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTCTGGTTGGCTCAGCAGTTCTTCCTATTGCTTTTATGCTTCTATGGAAAAGAGCAAATGCAATTGGAGCCATTTCTGGAACAATATTTGGTTGTGTTCTGGGAATTATCACATGGTTGTCTGTTACAAAAATACAGTATGGCCGGATAAACCTTGACACAACTGGCAGAAATGTACCAATGCTTGCTGGAAACCTTGTCTCTATACTAACTGGAGGAGTTATTCATGCTATCTGCAGCATGTTGTGGCCTCAGAACTATGACTGGAGTACCACCAAACAGATCACAGTGGTTGAAAAGGAAAAGACTGACCTTCCAGCAGAAGAGTTTAAAGAAGAAAAGTTAACAAGAGCCAAAGCATGGATAGTGAAATGGGGTGTTGGTTTCACTGTTTTGATAGTTATATTGTGGCCTATTCTCTCCCTCCCAGCAGGAGAGTTTAGCAAAGGCTACTTCTATTTCTGGGCAGTGATTGCTATAATATGGGGCACTGTTGGTTCTGCTGTGATAATTATTTTACCACTGATAGAGAGCTGGGAAACCATCCAAACTGTCATTCTTGGCATGTTTACAAATGACAGGCTCATGGAGAATGTGGAGGAGTTAAATTTCAAGTTGAGGACAATCATGCAAGCAATACCAGAAGCAGAGAGACTTTACTTGCTTGAGAAGGAAAAGGCCAAAAAATTAGAAGCCTCAGAGCAACAATCTTGTTCACTTCCTATATGA 2205 0.4272 MHTNSFLILCYYLLGLSFSSFMASALRCPPFEFSAKYYHLSENGGGCVRQTSFFEGKPVLDQGVGYSVILGFGAFFALFTSFLVWLEKRYVGSRHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGASIQVLLFGIMAIEIKRKAPHAHTVCEIVKARWGTSAHIVFLFFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHIVLVIFVYLVYTASSELGSPTVVYNRLLEVASKSRTCQDPISHHGQSCGPVSGNHEGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINESEAIRGLVPPATAVALMGKGGSVLLLTMLFMAVTSSGSSELIAVSSLCTYDIYRTYINPNASGKKILKVSRAVVLGFGCFMGLLAVILNKAGISLGWMYLAMGVLVGSAVLPIAFMLLWKRANAIGAISGTIFGCVLGIITWLSVTKIQYGRINLDTTGRNVPMLAGNLVSILTGGVIHAICSMLWPQNYDWSTTKQITVVEKEKTDLPAEEFKEEKLTRAKAWIVKWGVGFTVLIVILWPILSLPAGEFSKGYFYFWAVIAIIWGTVGSAVIIILPLIESWETIQTVILGMFTNDRLMENVEELNFKLRTIMQAIPEAERLYLLEKEKAKKLEASEQQSCSLPI. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01208 734 Pfam Sodium:solute symporter family 101 523 IPR001734 GO:0016020|GO:0022857|GO:0055085
Seca10g01208 734 Gene3D Sodium/glucose cotransporter 89 632 IPR038377 -
Seca10g01208 734 Coils Coil 684 704 - -
Seca10g01208 734 NCBIfam sodium/solute symporter 100 523 IPR001734 GO:0016020|GO:0022857|GO:0055085
Seca10g01208 734 FunFam Urea active transporter 88 598 - -
Seca10g01208 734 PANTHER - 36 718 IPR031155 GO:0015204|GO:0016020|GO:0071918
Seca10g01208 734 CDD SLC5sbd_DUR3 66 575 - -
Seca10g01208 734 ProSiteProfiles Sodium:solute symporter family profile. 65 537 IPR001734 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01208 Seca-Chr10 11902774 11906949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01208 28 721 Organic Solute Cotransporters AT5G45380 78.255 0.0 1114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01208 K20989 - gmx:100784391 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01208 10 11902774 11906949 Seca10g01208 10 11902774 11906949 ECH