Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01181 ATGGGTCTGCCAAGGTTTGGGCGTCCTAAGAATGATGGTGAATTGAGCGCAAACCTTTACGTGGCAAATTGTGGGCCATCTGTGGGACTCTCTGAAGATGACATTGCATCTGTGTTCTGCAAATTTGGGGAACTCAAGGGAGTTTATGCAGCAGATGAAAGTGGCACACGTGTCATTGTATCTTATTCTGAAGAGGGTTCTGCACAAGCTGCCTTAAAAGTATTAGATGGATGTCCATGTCCTGAACTTGGAGGTCGATCCTTGCATATCCGTTATTCAGTGCTTCAGCCAACTCCACAGGATCAAGTGAGGGACTTGGATCCTGTATGCATCACAGCGTCCGATCTGAGCATTCCAGGCATTTACCTATTGCATGACTTCATTAGTGCTAAAGAAGAAGAGGAATTGCTCCAAGCTGTTGACTGTAGGCCTTGGAATAGTCTTGCAAAAAGAAGGGTTCAACACTATGGTTATGAATTTTGTTATGACACTAGGAATGTTAATACAAGGCATTGCTTAGGTGAACTTCCATCATTTGTTTCTCCAATACTTGAAAGAATCTCATCATGTCCAACTTTCAAGAATGCTGATAGTATAGTTTTGGACCAACTCACAGTAAATGAGTACCCACCTGGAGTTGGCTTGTCCCCTCATATAGATACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATAATGGAGTTCAGACAATATCAAAATGGTGATTGCCATCCTAGAATTGCCTCAAGTGCTGTTACAAAAATAGAAAATTCAGATGATTCAAATTTTATAAGGAGGGTTATCTATCTGCCCCCTCGATCTTTGCTACTCATGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACACCACAAGGTAGACAAAGTGAATGGAAGAGTCATCAGAAGGGCTTCAAGAAGAGTATCTTTTACATTTCGTAAGGTGTGTGGACATCATAGTTGCTTTTTCATCTGCCTACAAACACCATAA 1017 0.4149 MGLPRFGRPKNDGELSANLYVANCGPSVGLSEDDIASVFCKFGELKGVYAADESGTRVIVSYSEEGSAQAALKVLDGCPCPELGGRSLHIRYSVLQPTPQDQVRDLDPVCITASDLSIPGIYLLHDFISAKEEEELLQAVDCRPWNSLAKRRVQHYGYEFCYDTRNVNTRHCLGELPSFVSPILERISSCPTFKNADSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRQYQNGDCHPRIASSAVTKIENSDDSNFIRRVIYLPPRSLLLMSGEARYAWHHYIPHHKVDKVNGRVIRRASRRVSFTFRKVCGHHSCFFICLQTP. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01181 338 SUPERFAMILY Clavaminate synthase-like 118 324 - -
Seca10g01181 338 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 325 IPR005123 -
Seca10g01181 338 Pfam 2OG-Fe(II) oxygenase superfamily 157 322 IPR027450 -
Seca10g01181 338 Gene3D - 7 106 IPR012677 -
Seca10g01181 338 PANTHER OXYGENASE-RELATED 97 324 IPR032857 GO:0070988
Seca10g01181 338 FunFam ALKylated DNA repair protein AlkB homolog 114 328 - -
Seca10g01181 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Seca10g01181 338 Gene3D - 113 329 IPR037151 -
Seca10g01181 338 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01181 Seca-Chr10 11585882 11590403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01181 K10770 - gmx:100777529 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01181 10 11585882 11590403 Seca10g01181 10 11585882 11590403 ECH