Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01161 ATGGCGAGTGAATCTGGCACGAAAGGTCCTTCAACTTCATTGTCAAATGCCGCGGAGTCCTACATTGGTTGCTTCATAAGCTTGATTTCCAAGTGCGAGATTCGCTACGAAGGTGTTCTCTATTTGCTTAATATCCAGGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAGAAAAGATGGTCAACAAGTTTCTCCTAGTGATAAGATTTATGAATACATTCTTTTCCGAGGAAGTGACATTAAGAATTTGCAGATCAAGCCCCCCTCCACATCTGCCAAAGCAGAAGAGCAGATATTTAGTGATCCAGCTATAATTCAGTCACAATATTCTGGGGTGCCAAGTTCTTCAGTGGCCTCAGTTGGCGTGAGAAGTTTGACAGAACCAATTCAAAGGCAAGATAGCCCTGCCATGTCTAGCAAAGCCCTTCCTGCTGGATTGCCTGCTCATCAGTCTGGAACTCAACTGGGCCCTTCAAATCATTCTGCTGCTACTCAAGTTGCCAGTCATCCATCTTTTTCTACAGCAATGTATTGGCAAGGACTCAGTGGGGCATCAAGCAATAACTCTCATTCACTACTACAGTCCAGTTTTCTTCAACCCCCATCAATAGCACCACCCTTAGCTGTGCAGAATCGGATGCAATCTGCAGAAACTCAGGCACCTACAGAAGTGGGATGGACAACTTTGTCAGATGGTGGTCTACCTGCATCTTCCTCCATGACTTCTTCTCATGTAAATCTAACTCGTTCACCTTCTCCGACCTCTTTACAAATTTCTGATTCTCTTGATATTCCACCCCTTTTATCTACTAGGACACCTATGCCATATTCTGCATCAATGACTTTTGATGGATCAAACATGCCTTTGTGTTCTTCACCTCTCCAAGACATAAATTCCACTGAAGGTCAAATATCAAGACAAAGTTGTCCTGACCCAAGGCCAATTTATCCTCGACATTCTTTCCATCATCCCACTTCTTCATTTGTAAATTCTACATCAGGTCCCTTGCCAACACCTCCATCTTTGTTAACTCCAGATCAATTTGCACACCCTAGAGAACAGTTATTTTCTTTGTCACATAATTTAAACCCCAATCAGAAAGATATGGGTTCTCTAACTCTAACATCCTCTGGTTCCTCTGTATTAATGCCCACTCCAGCATCTCAAGCACCATTACTGCCCCTACCAAATTCAGTGCGAAAGCCTCAGTATTCAGCTTCACAGTTCGATGAGGAGTTTGATTTTGAGGCCATGAATGAGAAGTTTAAAAAGGATGAAGTATGGGGTTCTCTAGGAAAGGCAACCACGAGATTAGAGGGAGTGGAGGACAATGTTTCTCTCAATTTGGGTGATAGAGAATGTCATGGGATGATACCAAACCCCAAGACCGCATACAAGAAAGATGACTTTTTTGACACAATTTCTTGTAACTCTATGACTCGAGGATCGAGGAATGGACAAAATCGTTTATCAGAGAGAATGAAAGTGGATACTGAGACATTTGGCAATTTTCATCACAGGCCCAGTGCTTATAGTGGCTATGGTGCTGGACGGGGTGTGAATTTCAGGGGGCCATATAATTGGGGAAGGGGTTATGGCTATGGGGGGAGAGGGCGTGGCCCAAACTTTCCTTTCTAG 1659 0.4376 MASESGTKGPSTSLSNAAESYIGCFISLISKCEIRYEGVLYLLNIQDSTIGLKNVRSYGTEGRRKDGQQVSPSDKIYEYILFRGSDIKNLQIKPPSTSAKAEEQIFSDPAIIQSQYSGVPSSSVASVGVRSLTEPIQRQDSPAMSSKALPAGLPAHQSGTQLGPSNHSAATQVASHPSFSTAMYWQGLSGASSNNSHSLLQSSFLQPPSIAPPLAVQNRMQSAETQAPTEVGWTTLSDGGLPASSSMTSSHVNLTRSPSPTSLQISDSLDIPPLLSTRTPMPYSASMTFDGSNMPLCSSPLQDINSTEGQISRQSCPDPRPIYPRHSFHHPTSSFVNSTSGPLPTPPSLLTPDQFAHPREQLFSLSHNLNPNQKDMGSLTLTSSGSSVLMPTPASQAPLLPLPNSVRKPQYSASQFDEEFDFEAMNEKFKKDEVWGSLGKATTRLEGVEDNVSLNLGDRECHGMIPNPKTAYKKDDFFDTISCNSMTRGSRNGQNRLSERMKVDTETFGNFHHRPSAYSGYGAGRGVNFRGPYNWGRGYGYGGRGRGPNFPF. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01161 552 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Seca10g01161 552 Gene3D - 12 96 - -
Seca10g01161 552 ProSiteProfiles TFG box profile. 492 512 IPR025768 -
Seca10g01161 552 MobiDBLite consensus disorder prediction 135 170 - -
Seca10g01161 552 ProSiteProfiles DFDF domain profile. 408 444 IPR025762 -
Seca10g01161 552 Pfam Scd6-like Sm domain 21 93 IPR025609 -
Seca10g01161 552 ProSiteProfiles FFD box profile. 470 485 IPR025761 -
Seca10g01161 552 SMART LSM14_2 15 116 IPR025609 -
Seca10g01161 552 Pfam FDF domain 415 510 IPR019050 -
Seca10g01161 552 PANTHER SCD6 PROTEIN-RELATED 16 547 - -
Seca10g01161 552 MobiDBLite consensus disorder prediction 239 267 - -
Seca10g01161 552 SMART FDF_2 414 512 IPR019050 -
Seca10g01161 552 CDD LSm14_N 18 92 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01161 Seca-Chr10 11266391 11272781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01161 K18749 - gmx:102669894 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01161 10 11266391 11272781 Seca10g01161 10 11266391 11272781 ECH