Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01152 ATGAATTTTTCGGACGAAGAGGACGAAAATCTAGCTCAATTTCTCGAATCAGAAGTCCTCTCCGAGGTCTCTGACAAGGAAGAGGAAAATGTTGAGGAACCCAAAGCAAAGAGAAAGCGCGTAGAAGAGGCTGAGAGTACTAAGCAGGGTACTAAACAAAGTCCTGATTCATCATCTGAACCTAAGAACTATGGTGTCAATAATGGCGTGGTGCCGAGAAGGATTGAGACTGGTCTTTTCAGCAAAATTCCGCCTGAGCTTTTTCATCATATCCTTAAATTTCTGTCTTCTGAGGACCTTATTTCTTGTTCCTCAGTCTGTAAATTTCTAAATTATGCGGCATCTGATGAAGCATTGTGGCGTCGCTTGTACTGTATGCGATGGGGTCTTCTTCCCCCCACTAGGAAGTTAAGGGAATGCCCATGGAAAAAGTTATATATTCAGCGTGATGGAGAGGACATGGTGGAACTTGTAAGAAGCTGCCAGAATGAGTTTAAGGAGTATTACATTCAAATGCAAGCAGCTAAGAGAAGTCAAGCACCTCTTCCTTCACAGTTAAAAGATGATAGGATAATTCTTGACAAAACATTAGCTGATCAAGTATCATCATGGAAAAGCAGCAGGGGCCTAAGTGATAAGGTGGTGACTGATCATGCTTGTTCTGGGGAAACATGCTCTTACTACCAAATTGGGGATGTATTTATTTGTGAGAAGACTGGACAAGTTCATGTTTGTGACGATACATGTAGAGAAGTGATTATGGATCCTACCAACGAGCTTTTGGTCTGTACAATATCAGGGCACTGTTTCGATAGATTACTATCACCATCTGAAATGGAGCCTGATGCTGAGCAGCAGCAAGGTGGTGCAACAGATGAGGCAGAACCATTTATGGGATCTGGCCGTTTTGGTAAACTCATCTCTTTTGGCTTTAGTTCTTCTTCTTTTTAA 951 0.4206 MNFSDEEDENLAQFLESEVLSEVSDKEEENVEEPKAKRKRVEEAESTKQGTKQSPDSSSEPKNYGVNNGVVPRRIETGLFSKIPPELFHHILKFLSSEDLISCSSVCKFLNYAASDEALWRRLYCMRWGLLPPTRKLRECPWKKLYIQRDGEDMVELVRSCQNEFKEYYIQMQAAKRSQAPLPSQLKDDRIILDKTLADQVSSWKSSRGLSDKVVTDHACSGETCSYYQIGDVFICEKTGQVHVCDDTCREVIMDPTNELLVCTISGHCFDRLLSPSEMEPDAEQQQGGATDEAEPFMGSGRFGKLISFGFSSSSF. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01152 316 CDD F-box_AtSKIP31-like 80 125 - -
Seca10g01152 316 MobiDBLite consensus disorder prediction 1 69 - -
Seca10g01152 316 MobiDBLite consensus disorder prediction 278 299 - -
Seca10g01152 316 FunFam F-box family protein-like 67 154 - -
Seca10g01152 316 ProSiteProfiles F-box domain profile. 77 123 IPR001810 GO:0005515
Seca10g01152 316 Pfam F-box-like 81 125 IPR001810 GO:0005515
Seca10g01152 316 PANTHER F-BOX ONLY PROTEIN 3 4 312 - -
Seca10g01152 316 SMART fbox_2 83 123 IPR001810 GO:0005515
Seca10g01152 316 Gene3D - 67 154 - -
Seca10g01152 316 SUPERFAMILY F-box domain 70 149 IPR036047 GO:0005515
Seca10g01152 316 MobiDBLite consensus disorder prediction 50 65 - -
Seca10g01152 316 MobiDBLite consensus disorder prediction 28 49 - -
Seca10g01152 316 Pfam UL92 family 224 287 IPR004289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01152 Seca-Chr10 11133785 11137029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01152 - - gmx:100778591 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01152 10 11133785 11137029 Seca10g01152 10 11133785 11137029 ECH