Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01145 ATGGTCCCCAAACCCATCATAGTAACAACTGCTGCATCTTCTGCATCTCCGCGCCTCCCTCTACTCAACATATCCGCTGTCAGAACCGAAGAAAAGGTACAAACCCAGACCTTAAGAACCACCCAAACACCAACACCAACGGTAACTACTACTCCTTCACCACCTCCCACCACCACTACCCAAAAAGCCAAACCTGACCCACTGATCAAGTATCCAGCAGCAGCGCGTGTGGATGTCACAAAAAGAACAGAACCATCGGTGCCAGCACTGATCTTCAATGCATTTGACGACATCATAAACAACTTCATAGACCCTCCATTGAAACCTTCCGTAGACCCAAGACACGTTCTATCCCAAAACTTCGCCCCTGTCAACGAACTCCCTCCAACAAACTGTGAAGTCATACAAGGCTCACTCCCACCATGCCTCGACGGCGCCTACATCAGAAACGGCCCAAACCCACAATTCCTCCCAAAGGGACCTTATCACCTCTTCGACGGTGACGGCATGCTTCACGCCATTCGAATCTCACAAGGCAAAGCCACACTCTGCAGCCGCTACGTCAAAACCTACAAATACAAAATCGAAAACGAAGCTGGTTTCCCTCTCATTCCCAACGTCTTCTCCGGCTTCAACACGCTCATAGCCTCCGCAGCACGTGGGTCCCTCACCGCAGCAAGAGTCATAACAGGTCAATACAACCCAATCAACGGCATTGGCTTAGCAAACACCAGTTTGGCTCTGTTTGGGAACCGTCTCTTCGCGTTAGGGGAATCAGACCTTCCTTATGAAGTTAAAATAACCGCAAACGGTGATATCCAAACACTCGGCCGTTACGACTTTAACGGAAAACTCTCCATGAGCATGACGGCGCATCCTAAAATAGACCCTGAAAGTGGTGAATGCTTTGCCTTCCGTTACGGCCCCGTCCCTCCTTTTCTAACGTATTTCCGTTTCGATTCTAACGGAATAAAACAACCAGACGTGCCTGTTTTCTCCATGACGCGCCCTTCTTTTCTTCACGACTTTGCGATTACCAAAAAGTACGCTATATTCGCCGACATTCAGATCGGAATGAACCCTCTGGACATGATTTCCGGTGGCTCTCCGGTGGGTTCAGATCCTTCTAAGGTGTCCAGGATCGGGATACTTCCTCGGTACGCAAAGGATGAGTCAGCGATAAAGTGGTTCGACGTGCCTGGGTTTAACATTATTCACGCGATTAACGCGTGGGATGAAGAGGATGGCAAAACGGTGTCGTTAATAGCGCCGAATATTCTGTCGGTGGAGCACACGATGGAGAGAATGGAGCTGGTGCATGCGATGGTGGAGAAGGTGAGGATCAACCTTGAAACGGGGATTGTTACTCGACAACCGTTATCAACGAGGAACCTTGATTTCGGGGTGATAAACCCGGCGTTTATGGCGAAGAAGAATAGGTTTGTGTATGCGGCGATTGGGGATCCCATGCCGAAGATTGCGGGGGTGGCGAAGCTTGATGTGGAGAAAGGGGAGACGGTTGGGTGTAGGATGTTCGGTGAAGGTTGTTACGGTGGGGAGCCGTTTTTTGTGGCGAGGGAAGAGGGTGAGGAAGATGATGGATATTTGGTGTCGTATGTGCATGATGAGGGGAAAGGAGAGTCGAGATTTTTGGTGATGGATGCGAAGTCGCCGGAGTTGGATGTTGTGGCGGCGGTGAAGCTTCCGCGGCGGGTGCCATATGGTTTTCATGGACTGTTTGTGAAGGAGAGTGACCTGAGAAAGGTGTCAGTGTAA 1776 0.5028 MVPKPIIVTTAASSASPRLPLLNISAVRTEEKVQTQTLRTTQTPTPTVTTTPSPPPTTTTQKAKPDPLIKYPAAARVDVTKRTEPSVPALIFNAFDDIINNFIDPPLKPSVDPRHVLSQNFAPVNELPPTNCEVIQGSLPPCLDGAYIRNGPNPQFLPKGPYHLFDGDGMLHAIRISQGKATLCSRYVKTYKYKIENEAGFPLIPNVFSGFNTLIASAARGSLTAARVITGQYNPINGIGLANTSLALFGNRLFALGESDLPYEVKITANGDIQTLGRYDFNGKLSMSMTAHPKIDPESGECFAFRYGPVPPFLTYFRFDSNGIKQPDVPVFSMTRPSFLHDFAITKKYAIFADIQIGMNPLDMISGGSPVGSDPSKVSRIGILPRYAKDESAIKWFDVPGFNIIHAINAWDEEDGKTVSLIAPNILSVEHTMERMELVHAMVEKVRINLETGIVTRQPLSTRNLDFGVINPAFMAKKNRFVYAAIGDPMPKIAGVAKLDVEKGETVGCRMFGEGCYGGEPFFVAREEGEEDDGYLVSYVHDEGKGESRFLVMDAKSPELDVVAAVKLPRRVPYGFHGLFVKESDLRKVSV. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01145 591 MobiDBLite consensus disorder prediction 32 47 - -
Seca10g01145 591 Pfam Retinal pigment epithelial membrane protein 123 582 IPR004294 GO:0016702
Seca10g01145 591 MobiDBLite consensus disorder prediction 32 66 - -
Seca10g01145 591 PANTHER BETA-CAROTENE DIOXYGENASE 124 582 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01145 Seca-Chr10 11040273 11042048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01145 K09840 - gmx:100777875 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01145 10 11040273 11042048 Seca10g01145 10 11040273 11042048 ECH