Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01144 ATGGAACTCATCGTTGCTCCGCCGCCAACACCACCCACCACCTCAACTGCTCCTCCTTCTTCCAACCACCTACTCGAACTTCCACTACCCCTTCCTCTACGCTACCCCAAACACAACCTCTCTCTCCTTCACAACATACACACTTCTTCACATTCACAACCCCTCCTACCCCTTACTCCCAAAACCACCACTTGGAGGAACAACAACAAGAGAAAAGAGGCTACAACGTCACACATCTTGCACTTGATGGATGCTCTGCCCTTTCCCATACCCATTGACATCTACACCTCTTTGATTAAAGAGTGCACTCTTTCTGGGGACCCTGAAACCGCCATTGAGCTCCATACCCACATCATCCACAGTGGCATCAAACCTCCCTTGCCCTTCCTCAATCGGATTCTCATCATGCTTGTGTCCTGCGGCCTGTTGGAGAATGCACGCCAACTGTTTGATTCAATGCATGTGAGAGACTTCAACTCTTGGGCAACTTTGTTTGTTGCTTACTATGAAAATGCTGATTATGAGGAGTCCACGTGTGTTTTTGTCAGCATGTTAGGCCAATTGGGTATGATGGAATTTCCTCCATGGATCTGGTCTTGCCTTCTCACGGCATGTGCTTGCACTGTGAATATCCCTCTTGGAATGCAAGTTCATGGGTGGCTATTGAAGTCAGGAAGTTCTAACCATGTGCTTCTAAGTAGCTCCTTGATTCGCTTTTATGGGAGATTCAAGTGCTTGGAGGATGCAAACGTTGTCTTTAATCAAGTTTCACGGCATAACACATTGACTTGGACAGCTAAAATTATTAATGGATGCAAGGAAATGCATTTCTCTGAGGCTCTTGATGACTTCATGGAGATGGGAAGGCAAGGGATAAAGAAGGATAGCTTTACGTTTTCCAGTGTTCTTAAGGCATGTGGAAAGATGCTGGATTATGGACGTTGTGGTCAACAGGTCCATGCTGATGCCATCAAACTTGGGCTGGTTTCGGATAAGTATGTGCAGTGTAGTTTGATAGCCATGTATGGAAGAAGTGGGTTACTGAGAGATGCAAAACAGGTGTTTGAGATGACCCAAGATGAAGGAAACGTTGATAGTTGGAATGCCATGCTTATGTGTTACATACAGAATGATATGTACATTGAAGCTGTTAAGTTTCTGTATCAGATGAAGGAAGCTGGAATGCAGCCCCGCGAACCTCTGCTTAATAAAGTAAGAATTGCTTGTGGCAGTATTACCTACTCAAGCATGAATTAA 1257 0.4511 MELIVAPPPTPPTTSTAPPSSNHLLELPLPLPLRYPKHNLSLLHNIHTSSHSQPLLPLTPKTTTWRNNNKRKEATTSHILHLMDALPFPIPIDIYTSLIKECTLSGDPETAIELHTHIIHSGIKPPLPFLNRILIMLVSCGLLENARQLFDSMHVRDFNSWATLFVAYYENADYEESTCVFVSMLGQLGMMEFPPWIWSCLLTACACTVNIPLGMQVHGWLLKSGSSNHVLLSSSLIRFYGRFKCLEDANVVFNQVSRHNTLTWTAKIINGCKEMHFSEALDDFMEMGRQGIKKDSFTFSSVLKACGKMLDYGRCGQQVHADAIKLGLVSDKYVQCSLIAMYGRSGLLRDAKQVFEMTQDEGNVDSWNAMLMCYIQNDMYIEAVKFLYQMKEAGMQPREPLLNKVRIACGSITYSSMN. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01144 418 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g01144 418 Gene3D Tetratricopeptide repeat domain 68 201 IPR011990 GO:0005515
Seca10g01144 418 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 315 416 - -
Seca10g01144 418 NCBIfam pentatricopeptide repeat 366 397 IPR002885 -
Seca10g01144 418 Gene3D Tetratricopeptide repeat domain 313 415 IPR011990 GO:0005515
Seca10g01144 418 Gene3D Tetratricopeptide repeat domain 202 312 IPR011990 GO:0005515
Seca10g01144 418 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 412 IPR046960 GO:0003723|GO:0009451
Seca10g01144 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Seca10g01144 418 Pfam PPR repeat family 260 307 IPR002885 -
Seca10g01144 418 MobiDBLite consensus disorder prediction 1 16 - -
Seca10g01144 418 Pfam PPR repeat 366 394 IPR002885 -
Seca10g01144 418 Pfam PPR repeat 337 362 IPR002885 -
Seca10g01144 418 Pfam PPR repeat 133 157 IPR002885 -
Seca10g01144 418 Pfam PPR repeat 94 123 IPR002885 -
Seca10g01144 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01144 Seca-Chr10 11034465 11035721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01144 89 413 Glycoside Hydrolase AT3G49170 29.167 7.87e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01144 - - gmx:100778405 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01144 10 11034465 11035721 Seca10g01144 10 11034465 11035721 ECH