LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g01095	ATGAGCGAAGCCGAAGCCTTATCGTACCCTCCGATTGACCCGGTGAACTTCGATCTCATCATCGTCGGCACCGGATTACCGGAATCCATCATTGCCGCCGCCGCATCCGCAGTCGGGAAGACCATCCTCCACCTCGACCCCAACACCTTCTACGGCGGCCATTTCGCTTCCCTCTCCCTCGACGACCTCACTTCTTACATCAATTCCACTCCCAAATCCATCACTGCCGCCGCATCCAGCGATTCTGACGACGTCGTTGTAGACCTCGTCCGGCAACCCTTGTGCTCCGACGCGGAGATCATTTCTTATGCTTCCGGCGACGAAGCTGCACTTCTGCGAGAAAATTCTAGAAAATTCAACCTCGATTTGGGAGGGCCCAGGGCATTGTTCAGTGCGGACAAGACCATCGATCTGTTGTTGAAATCAGGTGCTGCGCAGTACTTGGAGTTCAAGGGCATCGATACGAGCTTCGTGTACGAAGCCAATGGGGGCTTGGCGAACGTGCCGGATTCTCGCAGCGCGATTTTCAGAGACAAGAACCTTTCGCTGAAGGAAAAGAACCAATTGATGAGGTTCTTCAAGCTCGTTCAGCAGCACTTGGGTGATAATCAGGATGAAAAAATTTCTGAGGAAGATTTGGAGAGTTCGTTTGTTAGTTTCGTGGAGAAAATGCGGTTGCCGCCAAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGGTAGATTATGATCAAGACAATAACAAGGTTTGTAAAGATTTACTGAAAACAAAGGATGGAATAGATCGTTTAGCTCAATACAGCTCATCTGTCGGAAGGGTTTCCCAATGCACCAGGGGCTTTGCTTTATCCTATCTATGGTGA	864	0.4942	MSEAEALSYPPIDPVNFDLIIVGTGLPESIIAAAASAVGKTILHLDPNTFYGGHFASLSLDDLTSYINSTPKSITAAASSDSDDVVVDLVRQPLCSDAEIISYASGDEAALLRENSRKFNLDLGGPRALFSADKTIDLLLKSGAAQYLEFKGIDTSFVYEANGGLANVPDSRSAIFRDKNLSLKEKNQLMRFFKLVQQHLGDNQDEKISEEDLESSFVSFVEKMRLPPKIKSILLYAIAMVDYDQDNNKVCKDLLKTKDGIDRLAQYSSSVGRVSQCTRGFALSYLW.	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g01095	287	PANTHER	RAB GDP-DISSOCIATION INHIBITOR	13	276	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	PRINTS	Rab GDI/REP protein family signature	36	53	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	PRINTS	Rab GDI/REP protein family signature	135	151	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	PRINTS	Rab GDI/REP protein family signature	185	200	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	PRINTS	Rab GDI/REP protein family signature	18	36	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	Gene3D	-	13	106	IPR036188	-
	Seca10g01095	287	Pfam	GDP dissociation inhibitor	115	273	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	Pfam	GDP dissociation inhibitor	16	99	IPR018203	GO:0005092\|GO:0007264
	Seca10g01095	287	FunFam	Rab proteins geranylgeranyltransferase component	168	280	-	-
	Seca10g01095	287	Gene3D	Guanine Nucleotide Dissociation Inhibitor, domain 1	173	277	-	-
	Seca10g01095	287	Gene3D	Guanine Nucleotide Dissociation Inhibitor, domain 2	108	172	-	-
	Seca10g01095	287	SUPERFAMILY	FAD/NAD(P)-binding domain	15	246	IPR036188	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g01095	Seca-Chr10	10547096	10549278	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g01095	K23460		-	gmx:100795946	418.313

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca10g01095	10	10547096	10549278	Seca10g01095	10	10547096	10549278	ECH