Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01085 ATGTTGAAATATAATTATGCTTGGTATATGATTCAGCTAGAAACTGTGATTCCTGCACAACTGTCCTTTAAAGAGGATCCTGGAAGAATTTTGCGTGGCTTCAGAATTGCAGCTCGTCTAGGTTTATCTTTATCAAGGGAGACTGAGGCTGCAATCTGGACATATGCTTCACTAGTTAAGGACTTGAACAAGCAAAAGATAATGATTGAATTGAACTATATGCTGTCTTATGGAGCTGCTGAACCATCTCTGCGCTTGCTCTGGAAATTCAAATTGCTTGAATTTTTACTTCCAGTGCATGCAGCATATCTTGATGAACAGGCAACTAAAGAAGATGCTCAAGCTCAAGCTTCCAGTATGTTGATGAAATTATTCTTCCATCTGGATAATTTGGTTGGATGTGATAGACCTTCTGATTGCTCTCTATGGGTTGGATTGCTAGCATTTCACCTGGCATTAGTAAAAAATTCTCAAGATGCTCTTGTGGTGTGGACACTTGCTTCTGTTCTATATCATGGTGATTGGGAAGGTGGTGTTAAATTTGCTAAAGAACATGCGAAAATGTGTGTTAATTTTGCACCTGAAATAAGGAGGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATATTCGGCGATTGACTCTATACCTGCTCTGGTTGAGGATAGTAGTCTTCTTAAATCCCTGTCTAGATACCCATCTTTTCCACGCTCTGGCATTGTATTTATACCAAGGAAAACAGGGAGGACTGTTTCTGTAATTTTCAGAATGCTGGTCAATGATATTGAATTATATAAGAGTGAAAGAAAAAGTTCAAAGATCAATTATGACAAGCTTGGGAGGGGCGACCTTTCAGAGACTGCATTTGTTTTGGGCAAAATTATTCTTGAAACTATGAATAGTGGAATTGTTGGGGACAGAGTTGATTATAAGGGTGAAAAATGTCACCTTAAGACTGAGGGCACCAAGAAAATTGGCCAATTGCAACTTTCAGATCTATTTGTGGCAAGGAAAAATAAAAGACAGGTTTTATCAACATCAAATCCAGAACAAAGGCAAGAAAAAATCAAGAAACAGAAATTGGTTGAGAATGGATGTGATGCAGAGCAGAAAATGGGGTCGGGGAACCAAGAATTGTTTGAGAAATTTGAGTACAAGAAAACCAATGAAGAGCACCAGATGCCATTTAAGTTACGCAAGAAGATTGATCTATCTACGATGAAGGACTCTCCGCCAAAAAAGAACCGTCACAGAAAACAGCGGATAAATGATAGAAGGAAAATTGCCAGTGCTGGTAAAATTTCTTTATACCAGGCCAGTCATTTGAAGATGAATGAACATGATAAATGCACGTCATCACAATCCACAGTGTCCAAGAATCATCAGGTGATACCCAACAACTGCAACATAAACGTGGATGTAAAAGCAACAGATGAGTCAGACTTGTAG 1470 0.385 MLKYNYAWYMIQLETVIPAQLSFKEDPGRILRGFRIAARLGLSLSRETEAAIWTYASLVKDLNKQKIMIELNYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQATKEDAQAQASSMLMKLFFHLDNLVGCDRPSDCSLWVGLLAFHLALVKNSQDALVVWTLASVLYHGDWEGGVKFAKEHAKMCVNFAPEIRRSSIYKSDEEIAKAVTKLAYSAIDSIPALVEDSSLLKSLSRYPSFPRSGIVFIPRKTGRTVSVIFRMLVNDIELYKSERKSSKINYDKLGRGDLSETAFVLGKIILETMNSGIVGDRVDYKGEKCHLKTEGTKKIGQLQLSDLFVARKNKRQVLSTSNPEQRQEKIKKQKLVENGCDAEQKMGSGNQELFEKFEYKKTNEEHQMPFKLRKKIDLSTMKDSPPKKNRHRKQRINDRRKIASAGKISLYQASHLKMNEHDKCTSSQSTVSKNHQVIPNNCNINVDVKATDESDL. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01085 489 Gene3D - 13 244 - -
Seca10g01085 489 Pfam Probable RNA and SrmB- binding site of polymerase A 41 103 IPR032828 -
Seca10g01085 489 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 12 324 - -
Seca10g01085 489 MobiDBLite consensus disorder prediction 412 432 - -
Seca10g01085 489 SUPERFAMILY Poly A polymerase C-terminal region-like 13 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01085 Seca-Chr10 10409379 10421565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01085 - - gmx:100794882 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01085 10 10409379 10421565 Seca10g01085 10 10409379 10421565 ECH