Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01081 ATGGCATCTGGTGAAGGTGATACTGGTGGAATGATGGAAGGTCATGTAGAAGATTCTTCTATACTCGAGGAGCATTTACCTGATATGAATCATAAAGATGGAAGCAATTTAAAGTTTCTATCGGAAAATGGCTCCTCTGATGGCAATCAAGGTCCAGCTGATACTCATGATCAACTTCTAGAAATGGTGGTTGACCTCAGATTTCAGAATGAATTCTTGAAGTCCCAGTTTGAGGGATTTAGCAATGTAAACAGTGTATGTAGTGACTCTAGTATACAGAAAGGAGTTGGTGAAATGGAAGATGGGGAATCTGACATTGTGAAAGAACTCCAGGAAAGGATAGAATCATTAAATAAAGAATTTCTGGAAGAAAAACAAACAAGAATTGCATCTGAAGAGGCTTTGAAGCACCTTCAAATGGCATACTCAGAGGCAGAAGCAAAAGCCCAAGAACTCTCTGAAAAGCTTGTAGAAGCTCAAACGAAGTTGGAACAAGAAATAAAAGAGCGTGAAGAGAAGTACTCTGAACTTGACTCCAAGTTTAATAGGCTTCACAAACGAGCAAAACAACGTATTCAAGAGATTCAAAAGGAAAAAGATGATCTTGAGGCACGATTCTCTGAGGTGAATGAAACTGCTGAGCGAGCATCATCCCAACAGTCAGCATTGCAACAAGAGTTAGAGCGCACAAGGAAACAAGCAAATGAAGCATTGAAAGCCATGGACAGTGATAGGCAACAATTAAGAAGTGCAAACAATAAACTTCGAGATACCATTGAGGATTTACGTCGTTCGTTGGAACCTAAAGAGAGTGCTCTTGAGGCATTGCAACTGTCACTTGCAGAAAAGGAACAGATGTTGGAAGATATGAGAGGGTTGCTTCAGGCTGCTGATGAGAAAAGACAAGCTGCACTAGCTGAGCTCTCAGCTAAACATCAAAAGAATATAGAGAGTTTGGAGGCTCAACTTAATGATGCATTGTCTGATAGAAGTAAGGCAGCTGAATCTATTTCTTCACTGCAGGTTCTAGTTGCAGAGAAAGAATCTAGAATTGCAGAGATGGAGGCAGCATCAACTGGGGAAGCAGCACGACTCAGAGCAGCTGTCGAGAGTGTGAAGGGGGAGCTTTCTCACCTAAAACAGGAGCATGAAAAAGAAAGGGAAAGCTGGGAGACTGCATCTCATGCACTTAAAGCAAAACTTGAAATTGCTGAGAGCAACTGCATACGTGCAGAAGTTGAAGTAGCAAAAATAAGAAGTCAGCTTGAATCGGAGGTATCTGCACAAGCCAGGATTCTTAGTATGAAAGATGCTGAATTGTTGGCTGCCAAGGAAGAGATCAGCAGTCTTGAGCGAGAATTTTCTTCATACAAGGTTCGTGCACATGCACTTCTTCAAAAGAAGGATGCAGAACTGGCTGCAGCTAAAGACTCTGAACAACTCAAAGCTCTTGAAGAAGCTCTGAAAGAGACTGAAAATGAAGTATTATCAATAACTGAAGAAAGGGATAGAGTTCTTCAAGATTTTCAATCTGCTATGGCTAATCATGAGAAAGAACTTGCAGAAAGAGACACGGCCCTTGAAAATGCCAAGCAACAGATAAGGAGCTTAGAAATAAAGCTTGACTCGGTTAGTGCTCAGCACCTAAAAGAGAAAGAGGAATGGGGACTGAGCCTTCAAAATGTAGAAGAAACATGGAGAATCAGATGCGAGGCAATGAAGGCTGAAAATGAAGCAACTGCTGCACAAGATATGCAAAAGGAATTGGAAGAGCTCAAACAGCAAGGTAAAAAATTGAAGCAAGAGTATGCTTCATTTCATGATCTTGCTGATAGAATGATTGAGGACAAAGACAATGAAATATCCAGACTTTTAGATGAAAATAAGAATCTGCGCCAGTCTCTTCAATCAAGACCACCGGACTCTTTTTTCTACAACTGTTATGTAGCCTTGCATAAATTGGATTCAACAAGTTTAAGTCCCTCAGCTGCAGAACAACAAATTCTGATTTTGGCTAGACAACAGGCCCAAAGAGAGGAAGAGTTATCACAGTCACAGCGCCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACGTGAGAATCGTCTCCACAGCCAACAGGAGGCAATGTTAAAGGCTGAGCTTCGTGACATGGAAAGAGCAAAGAAAAGGGAAGGTGTAGATATGACATATTTGAAAAATATTATCTTAAAGCTTCTTGAGACAGGTGAAGTGGAGGTATTGCTACCAGTTGTTGGAATGCTGCTTCAGTTTAGTCCAGAAGAGGTAATTTTGTCATTGACTTTACTTTGCATCCCTAAGGCTCTTATTTGA 2340 0.4085 MASGEGDTGGMMEGHVEDSSILEEHLPDMNHKDGSNLKFLSENGSSDGNQGPADTHDQLLEMVVDLRFQNEFLKSQFEGFSNVNSVCSDSSIQKGVGEMEDGESDIVKELQERIESLNKEFLEEKQTRIASEEALKHLQMAYSEAEAKAQELSEKLVEAQTKLEQEIKEREEKYSELDSKFNRLHKRAKQRIQEIQKEKDDLEARFSEVNETAERASSQQSALQQELERTRKQANEALKAMDSDRQQLRSANNKLRDTIEDLRRSLEPKESALEALQLSLAEKEQMLEDMRGLLQAADEKRQAALAELSAKHQKNIESLEAQLNDALSDRSKAAESISSLQVLVAEKESRIAEMEAASTGEAARLRAAVESVKGELSHLKQEHEKERESWETASHALKAKLEIAESNCIRAEVEVAKIRSQLESEVSAQARILSMKDAELLAAKEEISSLEREFSSYKVRAHALLQKKDAELAAAKDSEQLKALEEALKETENEVLSITEERDRVLQDFQSAMANHEKELAERDTALENAKQQIRSLEIKLDSVSAQHLKEKEEWGLSLQNVEETWRIRCEAMKAENEATAAQDMQKELEELKQQGKKLKQEYASFHDLADRMIEDKDNEISRLLDENKNLRQSLQSRPPDSFFYNCYVALHKLDSTSLSPSAAEQQILILARQQAQREEELSQSQRHILALQEEIEELERENRLHSQQEAMLKAELRDMERAKKREGVDMTYLKNIILKLLETGEVEVLLPVVGMLLQFSPEEVILSLTLLCIPKALI. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01081 779 Coils Coil 362 421 - -
Seca10g01081 779 Coils Coil 513 554 - -
Seca10g01081 779 Coils Coil 100 127 - -
Seca10g01081 779 ProSiteProfiles GRIP domain profile. 724 771 IPR000237 -
Seca10g01081 779 Coils Coil 572 609 - -
Seca10g01081 779 MobiDBLite consensus disorder prediction 211 228 - -
Seca10g01081 779 Coils Coil 135 265 - -
Seca10g01081 779 MobiDBLite consensus disorder prediction 209 230 - -
Seca10g01081 779 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 64 764 - -
Seca10g01081 779 Coils Coil 433 460 - -
Seca10g01081 779 Coils Coil 467 508 - -
Seca10g01081 779 MobiDBLite consensus disorder prediction 36 53 - -
Seca10g01081 779 Pfam GRIP domain 728 764 IPR000237 -
Seca10g01081 779 Coils Coil 614 634 - -
Seca10g01081 779 MobiDBLite consensus disorder prediction 17 32 - -
Seca10g01081 779 Coils Coil 273 357 - -
Seca10g01081 779 SMART 1grip 727 769 IPR000237 -
Seca10g01081 779 Coils Coil 682 726 - -
Seca10g01081 779 MobiDBLite consensus disorder prediction 1 55 - -
Seca10g01081 779 Gene3D - 163 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01081 Seca-Chr10 10365525 10378296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01081 - - gmx:100775990 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01081 10 10365525 10378296 Seca10g01081 10 10365525 10378296 ECH