Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g00972 | ATGTCGTCGTCGAACAGACAGGATGAGGTTAGGGCGTCGCACATATTGGCGAAGCACCAAGGTTCTAGACGGAAGTCTTCATGGAAGGATCCAGAAGGCCGCTTCATCAGCAACACCACCAGAGACAGCGCTGCCGCTCAGCTCAATGCCCTTCGCGACGTCATCATTTCCGGCAAGGCCAACTTCGACGATGTCGCTTTTCGATTCTCCGATTGCAGCTCCGCCAAGCGTGGCGGCGATCTCGGTCCTTTTCATCGTGGGCAGATGCAGAAGCCTTTTGAAGAAGCAACTTTTGCTCTTAAAGTTGGTGAGATAAGTGACATAGTGGATACTGATAGTGGAGTCCACATAATCATGAGAACAGGTTAA | 369 | 0.5122 | MSSSNRQDEVRASHILAKHQGSRRKSSWKDPEGRFISNTTRDSAAAQLNALRDVIISGKANFDDVAFRFSDCSSAKRGGDLGPFHRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIMRTG. | 123 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g00972 | 122 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Seca10g00972 | 122 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 4 | 121 | - | - | |
| Seca10g00972 | 122 | ProSitePatterns | PpiC-type peptidyl-prolyl cis-trans isomerase signature. | 62 | 82 | IPR023058 | - | |
| Seca10g00972 | 122 | Pfam | PPIC-type PPIASE domain | 14 | 121 | IPR000297 | GO:0003755 | |
| Seca10g00972 | 122 | FunFam | Peptidyl-prolyl cis-trans isomerase Pin1 | 4 | 122 | - | - | |
| Seca10g00972 | 122 | SUPERFAMILY | FKBP-like | 7 | 121 | - | - | |
| Seca10g00972 | 122 | ProSiteProfiles | PpiC-type peptidyl-prolyl cis-trans isomerase family profile. | 7 | 122 | IPR000297 | GO:0003755 | |
| Seca10g00972 | 122 | Gene3D | - | 4 | 122 | IPR046357 | GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g00972 | Seca-Chr10 | 9281444 | 9284420 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g00972 | K09578 | - | csin:114304588 | 206.068 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca10g00972 | 10 | 9281444 | 9284420 | Seca10g00972 | 10 | 9281444 | 9284420 | ECH |