Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00933 ATGCTTGGCGCCACAAAACGGGTAGTTGGATTGATTCCTCGGAGGCTACGATCAGTGCGGCAAATCCATGGGGATGGGGAAGAAGGTTTTTTACAATTTCACAAGAGCAGAGGCCAGCACATTCTCATGAACCCTCGAATTCTGGACGCCATCGTTCGGAAATCCGCAATTAACCCCACCGATACAGTCCTCGAGATTGGACCCGGCACCGGCAACCTCACCCTCAAACTTCTAGAGGCCGCACACCAGGTTGTAGCCATCGAGATCGACCACCGCATGGTCCACGTTCTCGAGAAGCGCGTTCTCCAACGCGGACTCTGCAGTAAGCTCAGGGTCATAAAAAAAGATGCGTTGAGAACCGAATTCCCGCAATTTGATCTCGTCGTTGCCAACATTCCTTACGGGATATCTTCTCCTCTCGTGATTAAACTGGTGTATGGAACGACACCGTTTCGGAGCGCCACTCTTCTATTGCAGAAAGAGTTCGCTCGAAGGTTATTGGCTAATCCCGGTGACTCTGAGTATAACCGTTTGGCCGCGAATGTTAAGCTGTTGGCTGACGTGGAGTTTGTTATGGATGTGAGCAAGAGAGACTTTCTCCCATGCCCTAAAGTTGATTCCTCCGTCGTCATAATTCGCCCCAAACCTTGCGTCCCCAATGTGGATCTCCGTCAGTGGAGGGCTTTCACCAGGACTTGTTTTAATAACAAGAACAAGACACTCGGGGCCACGTTTAAGCACAAGAGGAAAGTCTCCGAGTTATTAGAAATTTCCAGTAATGTCTCTGGTTTAGATTGCAAAGGTGATGCTCAACATGAAGGAGGGGTTACCTCGTTCAAGGAAAAGATAATTGGAGTGCTTAGAGCTGAAGGGTTTGAAGACAAAAGGCCTTCAAAACTTACGCTTGAGGAATTACTGCATTTGCTCTCTTTGTTCAATCAAGCTGGTATATATTTTGATCACCGTGGAAACCTCAAGAATGAGGATGGGTTTGAGGTTGATGATGACTAG 1011 0.4797 MLGATKRVVGLIPRRLRSVRQIHGDGEEGFLQFHKSRGQHILMNPRILDAIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHQVVAIEIDHRMVHVLEKRVLQRGLCSKLRVIKKDALRTEFPQFDLVVANIPYGISSPLVIKLVYGTTPFRSATLLLQKEFARRLLANPGDSEYNRLAANVKLLADVEFVMDVSKRDFLPCPKVDSSVVIIRPKPCVPNVDLRQWRAFTRTCFNNKNKTLGATFKHKRKVSELLEISSNVSGLDCKGDAQHEGGVTSFKEKIIGVLRAEGFEDKRPSKLTLEELLHLLSLFNQAGIYFDHRGNLKNEDGFEVDDD. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00933 336 CDD AdoMet_MTases 62 141 - -
Seca10g00933 336 Pfam Ribosomal RNA adenine dimethylase 32 259 IPR001737 -
Seca10g00933 336 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 33 316 IPR001737 -
Seca10g00933 336 Gene3D Vaccinia Virus protein VP39 33 216 IPR029063 -
Seca10g00933 336 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 63 90 IPR020596 GO:0000154|GO:0000179|GO:0008649
Seca10g00933 336 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 32 310 IPR011530 GO:0000179|GO:0006364
Seca10g00933 336 PANTHER DIMETHYLADENOSINE TRANSFERASE 27 314 IPR001737 -
Seca10g00933 336 SMART rADcneu6 47 216 IPR020598 GO:0000154|GO:0000179|GO:0008649
Seca10g00933 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 314 IPR029063 -
Seca10g00933 336 Gene3D - 219 320 - -
Seca10g00933 336 FunFam rRNA adenine N(6)-methyltransferase 33 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00933 Seca-Chr10 8940999 8942530 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00933 K14191 - gmx:100790908 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00933 10 8940999 8942530 Seca10g00933 10 8940999 8942530 ECH